CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Foxp4
(
Rattus norvegicus
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00250 (Forkhead)
IPR001766
ENSRNOG00000022804
T186988_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including embryonic foregut morphogenesis; lung secretory cell differentiation; and negative regulation of lung goblet cell differentiation. Predicted to be active in nucleus. Orthologous to human FOXP4 (forkhead box P4). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FOXP1
M00836_2.00
Homo sapiens
NRTMAACANN
NNTGTTKAYN
PBM
Gabut et al.(2011)
pEX0123
0.798
0.926
FOXP1
M00837_2.00
Homo sapiens
DGTAAACAA
TTGTTTACH
PBM
Gabut et al.(2011)
pEX0124
0.798
0.926
FOXP1
M01976_2.00
Homo sapiens
RTAAACAA
TTGTTTAY
PBM
Weirauch et al.(2014)
pTH5656
0.798
0.926
Foxp1
M00793_2.00
Mus musculus
NRTMAAYAN
NTRTTKAYN
PBM
Weirauch et al.(2013)
pTH3855
0.798
0.926
FOXP1
M04811_2.00
Homo sapiens
NTGTTTRYNRTNNNNNNBNAYRVWMAACAN
NTGTTKWBYRTNVNNNNNNAYNRYAAACAN
SELEX
Yin et al.(2017)
FOXP1_eDBD_HT-SELEX
0.798
0.926
FOXP1
M08115_2.00
Homo sapiens
NDGTAAACAVNN
NNBTGTTTACHN
ChIP-seq
Mathelier et al.(2014)
MA0481.2
0.798
0.926
FOXP1
M09086_2.00
Homo sapiens
RKAAACAVM
KBTGTTTMY
Misc
Kulakovskiy et al.(2013)
FOXP1_HUMAN.H11MO.0.A
0.798
0.926
FOXP1
M09541_2.00
Homo sapiens
NDGTAAACAVNN
NNBTGTTTACHN
Misc
Heinz et al.(2010)
H9-FOXP1_GSE31006
0.798
0.926
FOXP1
M10536_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXP1_01
0.798
0.926
FOXP1
M04812_2.00
Homo sapiens
NTGTTTRYBRTNNNNNNBNAYRVWMAACAH
DTGTTKWBYRTNVNNNNNNAYVRYAAACAN
SELEX
Yin et al.(2017)
FOXP1_eDBD_Methyl-HT-SELEX
0.798
0.926
Foxp2
M00792_2.00
Mus musculus
RTAAACAD
HTGTTTAY
PBM
Weirauch et al.(2013)
pTH1288
0.789
0.901
FOXP2
M05866_2.00
Homo sapiens
RTAAAYAWNN
NNWTRTTTAY
SMiLE-seq
Isakova et al.(2017)
FOXP2
0.789
0.901
FOXP2
M08116_2.00
Homo sapiens
NDGTAAACAVN
NBTGTTTACHN
ChIP-seq
Mathelier et al.(2014)
MA0593.1
0.789
0.901
FOXP2
M09089_2.00
Homo sapiens
DGTAAACAV
BTGTTTACH
Misc
Kulakovskiy et al.(2013)
FOXP2_HUMAN.H11MO.0.C
0.789
0.901
Foxp2
M09101_2.00
Mus musculus
NGTAAACAN
NTGTTTACN
Misc
Kulakovskiy et al.(2013)
FOXP2_MOUSE.H11MO.0.A
0.789
0.901
FoxP
M03753_2.00
Drosophila melanogaster
AAACAACAACAA
TTGTTGTTGTTT
SELEX
Nitta et al.(2015)
CG16899_1
0.773
0.728
FoxP
M06201_2.00
Drosophila melanogaster
VRTAAACAA
TTGTTTAYB
B1H
Zhu et al.(2011)
CG16899_SANGER_5_FBgn0037735
0.773
0.728
FoxP
M06202_2.00
Drosophila melanogaster
VNNVBBAAAAAAAD
HTTTTTTTVVBNNB
B1H
Zhu et al.(2011)
CG2052_SANGER_2.5_FBgn0039905
0.773
0.728
FoxP
M06203_2.00
Drosophila melanogaster
NNNNNRAAAAAAWNN
NNWTTTTTTYNNNNN
B1H
Zhu et al.(2011)
CG2052_SOLEXA_2.5_FBgn0039905
0.773
0.728
FOXK2
M08118_2.00
Homo sapiens
NNRTAAACANN
NNTGTTTAYNN
ChIP-seq
Mathelier et al.(2014)
MA1103.1
0.699
0.444
FOXC1
M00259_2.00
Homo sapiens
RTAAACAW
WTGTTTAY
PBM
Barrera et al.(2016)
FOXC1_S82T
0.679
0.444
FOXC1
M00257_2.00
Homo sapiens
NNNVHHAAYA
TRTTDDBNNN
PBM
Barrera et al.(2016)
FOXC1_REF
0.679
0.432
Foxc1
M01982_2.00
Mus musculus
HNNRHMAAYA
TRTTKDYNND
PBM
Weirauch et al.(2014)
pTH2673
0.679
0.432
FOXC1
M03013_2.00
Homo sapiens
AWRTAAAYAAAYA
TRTTTRTTTAYWT
SELEX
Jolma et al.(2013)
FOXC1_1
0.679
0.432
FOXC1
M03014_2.00
Homo sapiens
NRWMAATATTKWYN
NRWMAATATTKWYN
SELEX
Jolma et al.(2013)
FOXC1_2
0.679
0.432
FOXC1
M03015_2.00
Homo sapiens
WRWRTMAAYAW
WTRTTKAYWYW
SELEX
Jolma et al.(2013)
FOXC1_3
0.679
0.432
Foxc1
M03059_2.00
Mus musculus
RTAAAYAAACA
TGTTTRTTTAY
SELEX
Jolma et al.(2013)
Foxc1_1
0.679
0.432
Foxc1
M03060_2.00
Mus musculus
RTAAACA
TGTTTAY
SELEX
Jolma et al.(2013)
Foxc1_2
0.679
0.432
FOXC1
M09083_2.00
Homo sapiens
SBWAWRTAAACADHN
NDHTGTTTAYWTWVS
Misc
Kulakovskiy et al.(2013)
FOXC1_HUMAN.H11MO.0.C
0.679
0.432
Foxc1
M09111_2.00
Mus musculus
SBWAWRTAAACADHN
NDHTGTTTAYWTWVS
Misc
Kulakovskiy et al.(2013)
FOXC1_MOUSE.H11MO.0.C
0.679
0.432
FOXC1
M10525_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXC1_Q4
0.679
0.432
FOXC1
M10526_2.00
Homo sapiens
TSTTTATTTACDBNVN
NBNVHGTAAATAAASA
Transfac
Matys et al.(2006)
V$FREAC3_01
0.679
0.432
FOXC1
M00253_2.00
Homo sapiens
NNHATAAWHAN
NTDWTTATDNN
PBM
Barrera et al.(2016)
FOXC1_F112S
0.679
0.420
FOXC1
M00255_2.00
Homo sapiens
NRTATATWHNNN
NNNDWATATAYN
PBM
Barrera et al.(2016)
FOXC1_L130F
0.679
0.420
FOXC1
M00256_2.00
Homo sapiens
NNNNWWTYAMAWN
NWTKTRAWWNNNN
PBM
Barrera et al.(2016)
FOXC1_P79L
0.679
0.420
FOXC1
M00258_2.00
Homo sapiens
NNNAMAAYANN
NNTRTTKTNNN
PBM
Barrera et al.(2016)
FOXC1_S131L
0.679
0.420
Foxo6
M00798_2.00
Mus musculus
NNNNHHRYDN
NHRYDDNNNN
PBM
Weirauch et al.(2013)
pTH3477
0.672
0.420
FOXO6
M03049_2.00
Homo sapiens
GTAAACATGTTTAC
GTAAACATGTTTAC
SELEX
Jolma et al.(2013)
FOXO6_1
0.672
0.420
FOXO6
M03050_2.00
Homo sapiens
GTAAACA
TGTTTAC
SELEX
Jolma et al.(2013)
FOXO6_2
0.672
0.420
FOXO6
M03051_2.00
Homo sapiens
TTTCCCCACACGMC
GKCGTGTGGGGAAA
SELEX
Jolma et al.(2013)
FOXO6_3
0.672
0.420
Foxo3
M00797_2.00
Mus musculus
RTMAACAN
NTGTTKAY
PBM
Weirauch et al.(2013)
pTH3749
0.670
0.420
FOXO3
M03019_2.00
Homo sapiens
GTAAACATGTTTAC
GTAAACATGTTTAC
SELEX
Jolma et al.(2013)
FOXO3_1
0.670
0.420
FOXO3
M03020_2.00
Homo sapiens
GTAAACAW
WTGTTTAC
SELEX
Jolma et al.(2013)
FOXO3_2
0.670
0.420
FOXO3
M03021_2.00
Homo sapiens
KTTCCCCACAC
GTGTGGGGAAM
SELEX
Jolma et al.(2013)
FOXO3_3
0.670
0.420
FOXO3
M04813_2.00
Homo sapiens
HHCCCCACACN
NGTGTGGGGDD
SELEX
Yin et al.(2017)
FOXO3_eDBD_HT-SELEX
0.670
0.420
FOXO3
M09087_2.00
Homo sapiens
DGTAAACAVV
BBTGTTTACH
Misc
Kulakovskiy et al.(2013)
FOXO3_HUMAN.H11MO.0.B
0.670
0.420
Foxo3
M09110_2.00
Mus musculus
DGTAAACAVV
BBTGTTTACH
Misc
Kulakovskiy et al.(2013)
FOXO3_MOUSE.H11MO.0.B
0.670
0.420
FOXO3
M10537_2.00
Homo sapiens
WAHGTAAACAAVND
HNBTTGTTTACDWW
Transfac
Matys et al.(2006)
V$FOXO3_01
0.670
0.420
FOXO3
M10538_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXO3A_Q1
0.670
0.420
FOXO3
M10539_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXO3A_Q3
0.670
0.420
FOXO3
M04814_2.00
Homo sapiens
NHCCCCACACV
BGTGTGGGGDN
SELEX
Yin et al.(2017)
FOXO3_eDBD_Methyl-HT-SELEX
0.670
0.420
SPU_025010
M01988_2.00
Strongylocentrotus purpuratus
NNVNHHAYAN
NTRTDDNBNN
PBM
Weirauch et al.(2014)
pTH6641
0.667
0.420
Foxj3
M00160_2.00
Mus musculus
NRTAAACAHN
NDTGTTTAYN
PBM
Badis et al.(2009)
Foxj3_0982
0.665
0.444
Foxj3
M01981_2.00
Mus musculus
VNHHAYANN
NNTRTDDNB
PBM
Weirauch et al.(2014)
pTH6591
0.665
0.444
Foxj3
M03055_2.00
Mus musculus
ACGGACACAAT
ATTGTGTCCGT
SELEX
Jolma et al.(2013)
Foxj3_1
0.665
0.444
Foxj3
M03056_2.00
Mus musculus
GTAAACARTMAACA
TGTTKAYTGTTTAC
SELEX
Jolma et al.(2013)
Foxj3_2
0.665
0.444
Foxj3
M03057_2.00
Mus musculus
RTAAACAW
WTGTTTAY
SELEX
Jolma et al.(2013)
Foxj3_3
0.665
0.444
Foxj3
M03058_2.00
Mus musculus
RTAAACAWAAACA
TGTTTWTGTTTAY
SELEX
Jolma et al.(2013)
Foxj3_4
0.665
0.444
Foxj3
M09102_2.00
Mus musculus
WAAMMATAAACAN
NTGTTTATKKTTW
Misc
Kulakovskiy et al.(2013)
FOXJ3_MOUSE.H11MO.0.A
0.665
0.444
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000060921
Forkhead
109
191
RPPFTYASLIRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEREYQKRRPP
ENSRNOP00000070287
Forkhead
458
540
RPPFTYASLIRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEREYQKRRPP
Links
Other
Forkhead
family TFs
Other
Rattus norvegicus
TFs
706 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy