Alligator_sinensis_CCG004504.1 (Alligator sinensis)
Forkhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00250 (Forkhead) IPR001766 Alligator_sinensis_CCG004504.1 T188945_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Foxa2
M00162_2.00 		Mus musculus
GTAAAYAW
WTRTTTAC		 PBM
Badis et al.(2009)
Foxa2_2830 		0.728 0.741
FOXA2
M04815_2.00 		Homo sapiens
NHVNRYMAATATTKACNNDN
NHNNGTMAATATTKRYNBDN		 SELEX
Yin et al.(2017)
FOXA2_eDBD_HT-SELEX 		0.728 0.741
Foxa2
M08121_2.00 		Mus musculus
TRTTTACWYWDN
NHWRWGTAAAYA		 ChIP-seq
Mathelier et al.(2014)
MA0047.2 		0.728 0.741
FOXA2
M07959_2.00 		Homo sapiens
NNWRWGYAAAYANNN
NNNTRTTTRCWYWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA2_HudsonAlpha 		0.728 0.741
FOXA2
M09088_2.00 		Homo sapiens
NHWRWGTAAACA
TGTTTACWYWDN		 Misc
Kulakovskiy et al.(2013)
FOXA2_HUMAN.H11MO.0.A 		0.728 0.741
Foxa2
M09104_2.00 		Mus musculus
BNHTRTTKACWYW
WRWGTMAAYADNV		 Misc
Kulakovskiy et al.(2013)
FOXA2_MOUSE.H11MO.0.A 		0.728 0.741
FOXA2
M09542_2.00 		Homo sapiens
WVWGTMAACANV
BNTGTTKACWBW		 Misc
Heinz et al.(2010)
Liver-Foxa2_GSE25694 		0.728 0.741
FOXA2
M10540_2.00 		Homo sapiens
WAARYAAAYADKNMV
BKNMHTRTTTRYTTW		 Transfac
Matys et al.(2006)
V$HNF3B_01 		0.728 0.741
FOXA2
M10541_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3B_Q6 		0.728 0.741
AAA20679
M10575_2.00 		Xenopus laevis
WNWGTMAACAWWMW
WKWWTGTTKACWNW		 Transfac
Matys et al.(2006)
V$XFD3_01 		0.728 0.741
FOXA2
M04816_2.00 		Homo sapiens
NWRNRYMAATATTKACWNWN
NWNWGTMAATATTKRYNYWN		 SELEX
Yin et al.(2017)
FOXA2_eDBD_Methyl-HT-SELEX 		0.728 0.741
Q2L6N7_PELSI
M01990_2.00 		Trionyx sinensis
KTRTTTACA
TGTAAAYAM		 PBM
Weirauch et al.(2014)
pTH5334 		0.687 0.694
FOXA1
M04817_2.00 		Homo sapiens
NTRTKTACMYWN
NWRKGTAMAYAN		 SELEX
Yin et al.(2017)
FOXA1_eDBD_HT-SELEX 		0.682 0.694
FOXA1
M04819_2.00 		Homo sapiens
BVYTAWGTAAACAAWN
NWTTGTTTACWTARBV		 SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_1 		0.682 0.694
FOXA1
M04820_2.00 		Homo sapiens
HWRWRYAAATATTKACWYWR
YWRWGTMAATATTTRYWYWD		 SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_2 		0.682 0.694
FOXA1
M08117_2.00 		Homo sapiens
NNNNTRTTTACWYWD
HWRWGTAAAYANNNN		 ChIP-seq
Mathelier et al.(2014)
MA0148.3 		0.682 0.694
FOXA1
M07960_2.00 		Homo sapiens
NNYWRWGYAAACANN
NNTGTTTRCWYWRNN		 ChIP-seq
Gerstein et al.(2012)
ECC-1_FOXA1_HudsonAlpha 		0.682 0.694
FOXA1
M07961_2.00 		Homo sapiens
HWRWGTAAAYA
TRTTTACWYWD		 ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA1_HudsonAlpha 		0.682 0.694
FOXA1
M07962_2.00 		Homo sapiens
NWVWGTAAACA
TGTTTACWBWN		 ChIP-seq
Gerstein et al.(2012)
T-47D_FOXA1_HudsonAlpha 		0.682 0.694
FOXA1
M08199_2.00 		Homo sapiens
BWRDGTAAACANN
NNTGTTTACHYWV		 ChIP-seq
Contrino et al.(2012)
Mv69 		0.682 0.694
FOXA1
M08028_2.00 		Homo sapiens
WRWRYAAAYA
TRTTTRYWYW		 ChIP-seq
Chen et al.(2011)
GSE15244_FoxA1 		0.682 0.694
FOXA1
M09090_2.00 		Homo sapiens
VHWRWGTAAACA
TGTTTACWYWDB		 Misc
Kulakovskiy et al.(2013)
FOXA1_HUMAN.H11MO.0.A 		0.682 0.694
Foxa1
M09103_2.00 		Mus musculus
TRTTKACWYW
WRWGTMAAYA		 Misc
Kulakovskiy et al.(2013)
FOXA1_MOUSE.H11MO.0.A 		0.682 0.694
FOXA1
M09544_2.00 		Homo sapiens
WGCCAARRYAAAYANN
NNTRTTTRYYTTGGCW		 Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_2 		0.682 0.694
FOXA1
M09543_2.00 		Homo sapiens
WRWGTAAACA
TGTTTACWYW		 Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_1 		0.682 0.694
FOXA1
M09545_2.00 		Homo sapiens
WRWGTAAAYA
TRTTTACWYW		 Misc
Heinz et al.(2010)
MCF7-FOXA1_GSE26831 		0.682 0.694
FOXA1
M10542_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FOXA1_02 		0.682 0.694
FOXA1
M10543_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FOXA1_03 		0.682 0.694
FOXA1
M10544_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3A_01 		0.682 0.694
FOXA1
M10545_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3ALPHA_Q6 		0.682 0.694
FOXA1
M10546_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3A_Q6 		0.682 0.694
FOXA1
M04818_2.00 		Homo sapiens
NWRDGYMAAYAW
WTRTTKRCHYWN		 SELEX
Yin et al.(2017)
FOXA1_eDBD_Methyl-HT-SELEX 		0.682 0.694
FOXA1
M04821_2.00 		Homo sapiens
BVYTAWGTAAACAAWV
BWTTGTTTACWTARBV		 SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_1 		0.682 0.694
FOXA1
M04822_2.00 		Homo sapiens
YTRWRYAAATATTTACWYAR
YTRWGTAAATATTTRYWYAR		 SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_2 		0.682 0.694
FOXA3
M04831_2.00 		Homo sapiens
BVYTAWGTAAACAAAN
NTTTGTTTACWTARBV		 SELEX
Yin et al.(2017)
FOXA3_FL_HT-SELEX_1 		0.674 0.694
FOXA3
M04832_2.00 		Homo sapiens
HWRWGYAAATATTKACWYWD
HWRWGTMAATATTTRCWYWD		 SELEX
Yin et al.(2017)
FOXA3_FL_HT-SELEX_2 		0.674 0.694
FOXA3
M09096_2.00 		Homo sapiens
HWRWGTMAAYADN
NHTRTTKACWYWD		 Misc
Kulakovskiy et al.(2013)
FOXA3_HUMAN.H11MO.0.B 		0.674 0.694
Foxa3
M09106_2.00 		Mus musculus
HWRWGTMAAYADN
NHTRTTKACWYWD		 Misc
Kulakovskiy et al.(2013)
FOXA3_MOUSE.H11MO.0.A 		0.674 0.694
FOXA3
M10557_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3G_Q4 		0.674 0.694
FOXA3
M04833_2.00 		Homo sapiens
CVYTAWGTAAACAAWB
VWTTGTTTACWTARBG		 SELEX
Yin et al.(2017)
FOXA3_FL_Methyl-HT-SELEX_1 		0.674 0.694
FOXA3
M04834_2.00 		Homo sapiens
HWRWGYAAATATTKACWYWD
HWRWGTMAATATTTRCWYWD		 SELEX
Yin et al.(2017)
FOXA3_FL_Methyl-HT-SELEX_2 		0.674 0.694
For this family, TFs with SR scores > 0.664 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG004504.1 Forkhead 30 121

Links

Other Forkhead family TFs
Other Alligator sinensis TFs

174 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FOXA2 Loxodonta africana ENSLAFG00000026345 I 0.748
FOXA2 Monodelphis domestica ENSMODG00000006213 I 0.728
ENSMPUG00000001166 Mustela putorius furo ENSMPUG00000001166 I 0.728
Foxa2 Mus musculus ENSMUSG00000037025 D 0.728
ENSOARG00000005070 Ovis aries ENSOARG00000005070 I 0.728
ENSOANG00000015108 Ornithorhynchus anatinus ENSOANG00000015108 I 0.728
FOXA2 Macaca mulatta ENSMMUG00000010410 I 0.728
ENSLOCG00000016870 Lepisosteus oculatus ENSLOCG00000016870 I 0.728
FOXA2 Homo sapiens ENSG00000125798 D 0.728
FOXA2 Felis catus ENSFCAG00000012368 I 0.728
FOXA2 Gorilla gorilla ENSGGOG00000006368 I 0.728
ENSLACG00000008510 Latimeria chalumnae ENSLACG00000008510 I 0.728
FOXA2 Oryctolagus cuniculus ENSOCUG00000007368 I 0.728
ENSMEUG00000013519 Macropus eugenii ENSMEUG00000013519 I 0.728
FOXA2 Otolemur garnettii ENSOGAG00000033297 I 0.728
ENSP00000315955-D1 Bos grunniens ENSP00000315955-D1 I 0.728
Aan_R010229 Calypte anna Aan_R010229 I 0.728
Myotis_brandtii_Foxa2_10017244 Myotis brandtii Myotis_brandtii_Foxa2_10017244 I 0.728
AAA20679 Xenopus laevis AAA20679 D 0.728
foxa2.L Xenopus laevis XB-GENE-865381 I 0.728
foxa2 Xenopus tropicalis XB-GENE-480476 I 0.728
ENSTSYG00000005803 Tarsius syrichta ENSTSYG00000005803 I 0.728
FOXA2 Taeniopygia guttata ENSTGUG00000007523 I 0.728
Foxa2 Rattus norvegicus ENSRNOG00000013133 I 0.728
FOXA2 Ochotona princeps ENSOPRG00000006139 I 0.728
ENSSHAG00000014905 Sarcophilus harrisii ENSSHAG00000014905 I 0.728
FOXA2 Sus scrofa ENSSSCG00000007114 I 0.728
ENSSTOG00000020150 Ictidomys tridecemlineatus ENSSTOG00000020150 I 0.728
ENSFALG00000011663 Ficedula albicollis ENSFALG00000011663 I 0.728
ENSPANG00000011847 Papio anubis ENSPANG00000011847 I 0.728
ENSCPOG00000027068 Cavia porcellus ENSCPOG00000027068 I 0.728
FOXA2 Callithrix jacchus ENSCJAG00000005785 I 0.728
FOXA2 Bos taurus ENSBTAG00000012407 I 0.728
ENSAMEG00000015802 Ailuropoda melanoleuca ENSAMEG00000015802 I 0.728
ENSCSAG00000011062 Chlorocebus sabaeus ENSCSAG00000011062 I 0.728
ENSAPLG00000014329 Anas platyrhynchos ENSAPLG00000014329 I 0.728
ENSAPLG00000011202 Anas platyrhynchos ENSAPLG00000011202 I 0.725
foxa4.S Xenopus laevis XB-GENE-6254437 I 0.724
AAD03481 Xenopus laevis AAD03481 I 0.724
foxa4 Xenopus tropicalis XB-GENE-486455 I 0.723
AAD03479 Xenopus laevis AAD03479 I 0.723
Afo_R004467 Aptenodytes forsteri Afo_R004467 I 0.723
foxa4.L Xenopus laevis XB-GENE-865612 I 0.723
Sakowv30037646m.g Saccoglossus kowalevskii Sakowv30037646m.g I 0.709
CGI_10025509 Crassostrea gigas CGI_10025509 I 0.706
CapteG169665 Capitella teleta CapteG169665 I 0.706
TriadG27448 Trichoplax adhaerens TriadG27448 I 0.706
LotgiG183845 Lottia gigantea LotgiG183845 I 0.706
NEMVEDRAFT_v1g165261 Nematostella vectensis NEMVEDRAFT_v1g165261 I 0.704
Q2L6N7_PELSI Trionyx sinensis Q2L6N7_PELSI D 0.687
foxa2 Danio rerio ENSDARG00000003411 I 0.687
foxa1.S Xenopus laevis XB-GENE-6256649 I 0.686
ENSONIG00000011782 Oreochromis niloticus ENSONIG00000011782 I 0.685
ENSAMXG00000008595 Astyanax mexicanus ENSAMXG00000008595 I 0.685
ENSXMAG00000018285 Xiphophorus maculatus ENSXMAG00000018285 I 0.685
foxa1 Gasterosteus aculeatus ENSGACG00000004306 I 0.685
ENSAMXG00000000305 Astyanax mexicanus ENSAMXG00000000305 I 0.685
foxa1 Oryzias latipes ENSORLG00000019506 I 0.685
foxa1 Takifugu rubripes ENSTRUG00000006136 I 0.685
foxa1 Tetraodon nigroviridis ENSTNIG00000002587 I 0.685
ENSPFOG00000009082 Poecilia formosa ENSPFOG00000009082 I 0.685
Pvit_15615 Pogona vitticeps Pvit_15615 I 0.685
foxa1 Danio rerio ENSDARG00000102138 I 0.685
ENSXMAG00000016270 Xiphophorus maculatus ENSXMAG00000016270 I 0.683
foxa2 Gasterosteus aculeatus ENSGACG00000006986 I 0.683
foxa2 Oryzias latipes ENSORLG00000017407 I 0.683
ENSPFOG00000003245 Poecilia formosa ENSPFOG00000003245 I 0.683
ENSLACG00000012599 Latimeria chalumnae ENSLACG00000012599 I 0.683
ENSGMOG00000018910 Gadus morhua ENSGMOG00000018910 I 0.683
FOXA1 Sorex araneus ENSSARG00000008208 I 0.682
FOXA1 Dasypus novemcinctus ENSDNOG00000032245 I 0.682
ENSPPYG00000005758 Pongo abelii ENSPPYG00000005758 I 0.682
ENSPSIG00000011490 Pelodiscus sinensis ENSPSIG00000011490 I 0.682
FOXA1 Pan troglodytes ENSPTRG00000006285 I 0.682
FOXA1 Pteropus vampyrus ENSPVAG00000014588 I 0.682
Foxa1 Rattus norvegicus ENSRNOG00000009284 I 0.682
Aan_R005715 Calypte anna Aan_R005715 I 0.682
Gfo_R012942 Geospiza fortis Gfo_R012942 I 0.682
FOXA1 Anolis carolinensis ENSACAG00000001256 I 0.682
Ogr19511 Ophisaurus gracilis Ogr19511 I 0.682
foxa1 Xenopus tropicalis XB-GENE-487352 I 0.682
ENSP00000315955-D2 Bos grunniens ENSP00000315955-D2 I 0.682
Cmyd_10014568 Chelonia mydas Cmyd_10014568 I 0.682
ENSSTOG00000023537 Ictidomys tridecemlineatus ENSSTOG00000023537 I 0.682
ENSAMEG00000008009 Ailuropoda melanoleuca ENSAMEG00000008009 I 0.682
FOXA1 Tursiops truncatus ENSTTRG00000002855 I 0.682
ENSVPAG00000009933 Vicugna pacos ENSVPAG00000009933 I 0.682
ENSSSCG00000001940 Sus scrofa ENSSSCG00000001940 I 0.682
ENSSHAG00000001593 Sarcophilus harrisii ENSSHAG00000001593 I 0.682
FOXA1 Bos taurus ENSBTAG00000013888 I 0.682
ENSMODG00000012030 Monodelphis domestica ENSMODG00000012030 I 0.682
ENSCSAG00000015444 Chlorocebus sabaeus ENSCSAG00000015444 I 0.682
FOXA1 Felis catus ENSFCAG00000028305 I 0.682
ENSFALG00000006161 Ficedula albicollis ENSFALG00000006161 I 0.682
ENSOARG00000008192 Ovis aries ENSOARG00000008192 I 0.682
FOXA1 Canis familiaris ENSCAFG00000013743 I 0.682
Foxa1 Mus musculus ENSMUSG00000035451 D 0.682
ENSMPUG00000016255 Mustela putorius furo ENSMPUG00000016255 I 0.682
FOXA1 Otolemur garnettii ENSOGAG00000031319 I 0.682
FOXA1 Macaca mulatta ENSMMUG00000009653 I 0.682
ENSLOCG00000009382 Lepisosteus oculatus ENSLOCG00000009382 I 0.682
FOXA1 Loxodonta africana ENSLAFG00000000062 I 0.682
ENSLACG00000008212 Latimeria chalumnae ENSLACG00000008212 I 0.682
FOXA1 Homo sapiens ENSG00000129514 D 0.682
ENSPANG00000015153 Papio anubis ENSPANG00000015153 I 0.682
ENSMEUG00000000643 Macropus eugenii ENSMEUG00000000643 I 0.682
FOXA1 Myotis lucifugus ENSMLUG00000029779 I 0.682
ENSMICG00000003135 Microcebus murinus ENSMICG00000003135 I 0.682
FOXA1 Gorilla gorilla ENSGGOG00000022617 I 0.682
ENSCPOG00000026606 Cavia porcellus ENSCPOG00000026606 I 0.682
foxa2 Takifugu rubripes ENSTRUG00000008187 I 0.681
PTRK_0000571700 Parastrongyloides trichosuri PTRK_0000571700 I 0.681
foxa2 Tetraodon nigroviridis ENSTNIG00000016890 I 0.681
SPAL_0000059200 Strongyloides papillosus SPAL_0000059200 I 0.681
SSTP_0000682700 Strongyloides stercoralis SSTP_0000682700 I 0.681
SVE_0245400 Strongyloides venezuelensis SVE_0245400 I 0.681
ENSONIG00000008136 Oreochromis niloticus ENSONIG00000008136 I 0.681
Afo_R004187 Aptenodytes forsteri Afo_R004187 I 0.680
FOXA3 Anolis carolinensis ENSACAG00000007869 I 0.678
Cmyd_10002100 Chelonia mydas Cmyd_10002100 I 0.678
Alligator_sinensis_CCG000874.1 Alligator sinensis Alligator_sinensis_CCG000874.1 I 0.678
Pvit_16910 Pogona vitticeps Pvit_16910 I 0.678
Ogr11089 Ophisaurus gracilis Ogr11089 I 0.678
ENSPSIG00000006046 Pelodiscus sinensis ENSPSIG00000006046 I 0.678
FOXA3 Pteropus vampyrus ENSPVAG00000001359 I 0.676
FOXA1 Echinops telfairi ENSETEG00000011013 I 0.674
ENSP00000304004-D1 Bos grunniens ENSP00000304004-D1 I 0.674
ENSCSAG00000003110 Chlorocebus sabaeus ENSCSAG00000003110 I 0.674
ENSPPYG00000010580 Pongo abelii ENSPPYG00000010580 I 0.674
ENSPANG00000013224 Papio anubis ENSPANG00000013224 I 0.674
FOXA3 Loxodonta africana ENSLAFG00000030436 I 0.674
FOXA3 Ochotona princeps ENSOPRG00000010003 I 0.674
FOXA3 Bos taurus ENSBTAG00000012104 I 0.674
Myotis_brandtii_Foxa3_10004395 Myotis brandtii Myotis_brandtii_Foxa3_10004395 I 0.674
Myotis_brandtii_FOXA1_10021699 Myotis brandtii Myotis_brandtii_FOXA1_10021699 I 0.674
FOXA3 Pan troglodytes ENSPTRG00000011170 I 0.674
FOXA3 Dasypus novemcinctus ENSDNOG00000032062 I 0.674
Foxa3 Rattus norvegicus ENSRNOG00000014256 I 0.674
FOXA3 Cavia porcellus ENSCPOG00000024661 I 0.674
FOXA3 Homo sapiens ENSG00000170608 D 0.674
ENSOCUG00000001477 Oryctolagus cuniculus ENSOCUG00000001477 I 0.674
FOXA3 Gorilla gorilla ENSGGOG00000003972 I 0.674
FOXA3 Sus scrofa ENSSSCG00000003092 I 0.674
ENSMPUG00000005501 Mustela putorius furo ENSMPUG00000005501 I 0.674
ENSSTOG00000027457 Ictidomys tridecemlineatus ENSSTOG00000027457 I 0.674
FOXA3 Tursiops truncatus ENSTTRG00000014312 I 0.674
FOXA3 Canis familiaris ENSCAFG00000004363 I 0.674
ENSNLEG00000002392 Nomascus leucogenys ENSNLEG00000002392 I 0.674
FOXA3 Felis catus ENSFCAG00000027946 I 0.674
FOXA3 Callithrix jacchus ENSCJAG00000012163 I 0.674
FOXA3 Macaca mulatta ENSMMUG00000015438 I 0.674
ENSAMEG00000000677 Ailuropoda melanoleuca ENSAMEG00000000677 I 0.674
FOXA3 Procavia capensis ENSPCAG00000005390 I 0.674
BGLB001562 Biomphalaria glabrata BGLB001562 I 0.674
Foxa3 Mus musculus ENSMUSG00000040891 D 0.674
FOXA3 Otolemur garnettii ENSOGAG00000030286 I 0.674
FOXA3 Equus caballus ENSECAG00000005936 I 0.674
FOXA3 Monodelphis domestica ENSMODG00000021533 I 0.670
NV11589 Nasonia vitripennis NV11589 I 0.669
PPAI005166 Phlebotomus papatasi PPAI005166 I 0.666
LLOJ004664 Lutzomyia longipalpis LLOJ004664 I 0.666
BGIBMGA005101 Bombyx mori BGIBMGA005101 I 0.666
tetur14g02480 Tetranychus urticae tetur14g02480 I 0.666
L798_14202 Zootermopsis nevadensis L798_14202 I 0.666
KGM_03634 Danaus plexippus KGM_03634 I 0.666
HMEL017967 Heliconius melpomene HMEL017967 I 0.666
HHAL004914-PA Halyomorpha halys HHAL004914-PA I 0.666
SINV13287 Solenopsis invicta SINV13287 I 0.666
CLEC001132 Cimex lectularius CLEC001132 I 0.666
Hsal_05933--XP_394770.3_APIME Harpegnathos saltator Hsal_05933--XP_394770.3_APIME I 0.666
Cflo_09134--XP_394770.3_APIME Camponotus floridanus Cflo_09134--XP_394770.3_APIME I 0.666
ACEP13564 Atta cephalotes ACEP13564 I 0.666
RPRC000089 Rhodnius prolixus RPRC000089 I 0.665
FOXA2 Canis familiaris ENSCAFG00000005168 I 0.664