Alligator_sinensis_CCG017380.1 (Alligator sinensis)
Forkhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00250 (Forkhead) IPR001766 Alligator_sinensis_CCG017380.1 T188957_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FOXG1
M01978_2.00
Homo sapiens
RTAAACAH

DTGTTTAY
PBM
Weirauch et al.(2014)
pTH5501
0.884 1.000
Foxg1
M00791_2.00
Mus musculus
NNNNMHAYAN

NTRTDKNNNN
PBM
Weirauch et al.(2013)
pTH2846
0.884 1.000
FOXG1
M03032_2.00
Homo sapiens
RTAAACAATDGTAAACA

TGTTTACHATTGTTTAY
SELEX
Jolma et al.(2013)
FOXG1_1
0.884 1.000
FOXG1
M03033_2.00
Homo sapiens
RCGGACACAATR

YATTGTGTCCGY
SELEX
Jolma et al.(2013)
FOXG1_2
0.884 1.000
Foxg1
M03052_2.00
Mus musculus
ATAAACAAVTGTMAACA

TGTTKACABTTGTTTAT
SELEX
Jolma et al.(2013)
Foxg1_1
0.884 1.000
Foxg1
M03053_2.00
Mus musculus
MHGGACACAATC

GATTGTGTCCDK
SELEX
Jolma et al.(2013)
Foxg1_2
0.884 1.000
Foxg1
M03054_2.00
Mus musculus
GTAAACA

TGTTTAC
SELEX
Jolma et al.(2013)
Foxg1_3
0.884 1.000
FOXG1
M04839_2.00
Homo sapiens
NACRYMMACAH

DTGTKKRYGTN
SELEX
Yin et al.(2017)
FOXG1_eDBD_HT-SELEX
0.884 1.000
FOXG1
M04840_2.00
Homo sapiens
HRCGYMAACAH

DTGTTKRCGYD
SELEX
Yin et al.(2017)
FOXG1_eDBD_Methyl-HT-SELEX
0.884 1.000
foxg1a
M01985_2.00
Oryzias latipes
RTAAACAH

DTGTTTAY
PBM
Weirauch et al.(2014)
pTH6729
0.871 0.919
slp1
M01986_2.00
Drosophila melanogaster
NRTAAACANN

NNTGTTTAYN
PBM
Weirauch et al.(2014)
pTH6549
0.859 0.756
slp1
M03736_2.00
Drosophila melanogaster
WDYRTAAACAWW

WWTGTTTAYRHW
SELEX
Nitta et al.(2015)
slp1_1
0.859 0.756
slp1
M03737_2.00
Drosophila melanogaster
RTRTAAACAAAYADH

DHTRTTTGTTTAYAY
SELEX
Nitta et al.(2015)
slp1_2
0.859 0.756
slp1
M06474_2.00
Drosophila melanogaster
WRBVWAAACAH

DTGTTTWBVYW
B1H
Mathelier et al.(2014)
MA0458.1
0.859 0.756
slp1
M06195_2.00
Drosophila melanogaster
WRBVWAAACAH

DTGTTTWBVYW
B1H
Zhu et al.(2011)
slp1_NAR_FBgn0003430
0.859 0.756
slp1
M09669_2.00
Drosophila melanogaster
ATGTMAACAMAVV

BBTKTGTTKACAT
Misc
Kulakovskiy et al.(2009)
slp1
0.859 0.756
CBG14280
M01974_2.00
Caenorhabditis briggsae
RTAAACAN

NTGTTTAY
PBM
Weirauch et al.(2014)
pTH6734
0.854 0.779
slp2
M03738_2.00
Drosophila melanogaster
NNTRTTTACAACAHN

NDTGTTGTAAAYANN
SELEX
Nitta et al.(2015)
slp2_1
0.839 0.907
slp2
M06196_2.00
Drosophila melanogaster
RTAAACAV

BTGTTTAY
B1H
Zhu et al.(2011)
slp2_SANGER_5_FBgn0004567
0.839 0.907
FOXI1
M03026_2.00
Homo sapiens
GTAAACA

TGTTTAC
SELEX
Jolma et al.(2013)
FOXI1_1
0.759 0.640
FOXI1
M03027_2.00
Homo sapiens
RTGTKTACGGTAAACAA

TTGTTTACCGTAMACAY
SELEX
Jolma et al.(2013)
FOXI1_2
0.759 0.640
FOXI1
M04827_2.00
Homo sapiens
NNNNNRTMAACAN

NTGTTKAYNNNNN
SELEX
Yin et al.(2017)
FOXI1_eDBD_HT-SELEX
0.759 0.640
FOXI1
M04829_2.00
Homo sapiens
AAYGTAAACAMW

WKTGTTTACRTT
SELEX
Yin et al.(2017)
FOXI1_FL_HT-SELEX
0.759 0.640
FOXI1
M09095_2.00
Homo sapiens
RRCCAATCAVAD

HTBTGATTGGYY
Misc
Kulakovskiy et al.(2013)
FOXI1_HUMAN.H11MO.0.B
0.759 0.640
FOXI1
M10556_2.00
Homo sapiens
HAWAYAAAYAHVH

DBDTRTTTRTWTD
Transfac
Matys et al.(2006)
V$HFH3_01
0.759 0.640
FOXI1
M04828_2.00
Homo sapiens
NWWVHRTAAACAH

DTGTTTAYDBWWN
SELEX
Yin et al.(2017)
FOXI1_eDBD_Methyl-HT-SELEX
0.759 0.640
FOXI1
M04830_2.00
Homo sapiens
AAYRTAAACAAW

WTTGTTTAYRTT
SELEX
Yin et al.(2017)
FOXI1_FL_Methyl-HT-SELEX
0.759 0.640
Foxi1
M09109_2.00
Mus musculus
RRCCAATCAVAD

HTBTGATTGGYY
Misc
Kulakovskiy et al.(2013)
FOXI1_MOUSE.H11MO.0.B
0.759 0.628
Foxl1
M00164_2.00
Mus musculus
NNNRTMAAYA

TRTTKAYNNN
PBM
Badis et al.(2009)
Foxl1_2809
0.741 0.686
FOXL1
M03034_2.00
Homo sapiens
RTAAACA

TGTTTAY
SELEX
Jolma et al.(2013)
FOXL1_1
0.741 0.686
FOXL1
M03035_2.00
Homo sapiens
NRTAAAYAAAYAN

NTRTTTRTTTAYN
SELEX
Jolma et al.(2013)
FOXL1_2
0.741 0.686
FOXL1
M10558_2.00
Homo sapiens
DHNVHATAAAYAHNNN

NNNDTRTTTATDBNDH
Transfac
Matys et al.(2006)
V$FREAC7_01
0.741 0.686
FOXE1
M04845_2.00
Homo sapiens
BVYTAWRYAAACADN

NHTGTTTRYWTARBV
SELEX
Yin et al.(2017)
FOXE1_eDBD_HT-SELEX
0.740 0.640
FOXE1
M04846_2.00
Homo sapiens
BVYTAARYAAACAWH

DWTGTTTRYTTARBV
SELEX
Yin et al.(2017)
FOXE1_eDBD_Methyl-HT-SELEX
0.740 0.640
Foxc2
M00796_2.00
Mus musculus
HNNRHMAAYA

TRTTKDYNND
PBM
Weirauch et al.(2013)
pTH3796
0.734 0.721
FOXC2
M03036_2.00
Homo sapiens
NRTMAATATTDWYN

NRWHAATATTKAYN
SELEX
Jolma et al.(2013)
FOXC2_1
0.734 0.721
FOXC2
M03037_2.00
Homo sapiens
RTAAAYAAACA

TGTTTRTTTAY
SELEX
Jolma et al.(2013)
FOXC2_2
0.734 0.721
FOXC2
M03038_2.00
Homo sapiens
WAHRTMAAYAWW

WWTRTTKAYDTW
SELEX
Jolma et al.(2013)
FOXC2_3
0.734 0.721
FOXC2
M04841_2.00
Homo sapiens
NHVNRYMAACAH

DTGTTKRYNBDN
SELEX
Yin et al.(2017)
FOXC2_eDBD_HT-SELEX_1
0.734 0.721
FOXC2
M04842_2.00
Homo sapiens
RHAMAYAAACAH

DTGTTTRTKTDY
SELEX
Yin et al.(2017)
FOXC2_eDBD_HT-SELEX_2
0.734 0.721
FOXC2
M10559_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FKHL14_Q2
0.734 0.721
FOXC2
M04843_2.00
Homo sapiens
NHNNRYMAACAN

NTGTTKRYNNDN
SELEX
Yin et al.(2017)
FOXC2_eDBD_Methyl-HT-SELEX_1
0.734 0.721
FOXC2
M04844_2.00
Homo sapiens
VHMMAYAAACAN

NTGTTTRTKKDB
SELEX
Yin et al.(2017)
FOXC2_eDBD_Methyl-HT-SELEX_2
0.734 0.721
foxe3
M01228_2.00
Xenopus tropicalis
WNNVHHMAYW

WRTKDDBNNW
PBM
Lambert et al.(2019)
pTH9824
0.727 0.674
fd64A
M06197_2.00
Drosophila melanogaster
KVWAAACA

TGTTTWBM
B1H
Zhu et al.(2011)
fd64A_SANGER_5_FBgn0004895
0.712 0.721
FOXC1
M00257_2.00
Homo sapiens
NNNVHHAAYA

TRTTDDBNNN
PBM
Barrera et al.(2016)
FOXC1_REF
0.709 0.698
Foxc1
M01982_2.00
Mus musculus
HNNRHMAAYA

TRTTKDYNND
PBM
Weirauch et al.(2014)
pTH2673
0.709 0.698
FOXC1
M03013_2.00
Homo sapiens
AWRTAAAYAAAYA

TRTTTRTTTAYWT
SELEX
Jolma et al.(2013)
FOXC1_1
0.709 0.698
FOXC1
M03014_2.00
Homo sapiens
NRWMAATATTKWYN

NRWMAATATTKWYN
SELEX
Jolma et al.(2013)
FOXC1_2
0.709 0.698
FOXC1
M03015_2.00
Homo sapiens
WRWRTMAAYAW

WTRTTKAYWYW
SELEX
Jolma et al.(2013)
FOXC1_3
0.709 0.698
Foxc1
M03059_2.00
Mus musculus
RTAAAYAAACA

TGTTTRTTTAY
SELEX
Jolma et al.(2013)
Foxc1_1
0.709 0.698
Foxc1
M03060_2.00
Mus musculus
RTAAACA

TGTTTAY
SELEX
Jolma et al.(2013)
Foxc1_2
0.709 0.698
FOXC1
M09083_2.00
Homo sapiens
SBWAWRTAAACADHN

NDHTGTTTAYWTWVS
Misc
Kulakovskiy et al.(2013)
FOXC1_HUMAN.H11MO.0.C
0.709 0.698
Foxc1
M09111_2.00
Mus musculus
SBWAWRTAAACADHN

NDHTGTTTAYWTWVS
Misc
Kulakovskiy et al.(2013)
FOXC1_MOUSE.H11MO.0.C
0.709 0.698
FOXC1
M10525_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXC1_Q4
0.709 0.698
FOXC1
M10526_2.00
Homo sapiens
TSTTTATTTACDBNVN

NBNVHGTAAATAAASA
Transfac
Matys et al.(2006)
V$FREAC3_01
0.709 0.698
FOXC1
M00253_2.00
Homo sapiens
NNHATAAWHAN

NTDWTTATDNN
PBM
Barrera et al.(2016)
FOXC1_F112S
0.709 0.686
FOXC1
M00255_2.00
Homo sapiens
NRTATATWHNNN

NNNDWATATAYN
PBM
Barrera et al.(2016)
FOXC1_L130F
0.709 0.686
FOXC1
M00256_2.00
Homo sapiens
NNNNWWTYAMAWN

NWTKTRAWWNNNN
PBM
Barrera et al.(2016)
FOXC1_P79L
0.709 0.686
FOXC1
M00258_2.00
Homo sapiens
NNNAMAAYANN

NNTRTTKTNNN
PBM
Barrera et al.(2016)
FOXC1_S131L
0.709 0.686
FOXC1
M00259_2.00
Homo sapiens
RTAAACAW

WTGTTTAY
PBM
Barrera et al.(2016)
FOXC1_S82T
0.709 0.686
FOXD2
M03042_2.00
Homo sapiens
NRTMAAYRTTWDYN

NRHWAAYRTTKAYN
SELEX
Jolma et al.(2013)
FOXD2_1
0.692 0.698
FOXD2
M03043_2.00
Homo sapiens
RTAAAYA

TRTTTAY
SELEX
Jolma et al.(2013)
FOXD2_2
0.692 0.698
FOXD2
M04851_2.00
Homo sapiens
HWASAATAAYAWWN

NWWTRTTATTSTWD
SELEX
Yin et al.(2017)
FOXD2_eDBD_HT-SELEX_1
0.692 0.698
FOXD2
M04852_2.00
Homo sapiens
VYWANRTAAAYAH

DTRTTTAYNTWRB
SELEX
Yin et al.(2017)
FOXD2_eDBD_HT-SELEX_2
0.692 0.698
FOXD1
M02681_2.00
Homo sapiens
GTAAACAD

HTGTTTAC
SELEX
Mathelier et al.(2014)
MA0031.1
0.692 0.698
Foxd1
M10570_2.00
Mus musculus
SYWAWGTAAACADHVN

NBDHTGTTTACWTWRS
Transfac
Matys et al.(2006)
V$FREAC4_01
0.692 0.698
FOXD1
M10567_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FREAC4_02
0.692 0.698
FOXD2
M04853_2.00
Homo sapiens
HWACAATAACRWWN

NWWYGTTATTGTWD
SELEX
Yin et al.(2017)
FOXD2_eDBD_Methyl-HT-SELEX_1
0.692 0.698
FOXD2
M04854_2.00
Homo sapiens
RYTRNGTMAACRD

HYGTTKACNYARY
SELEX
Yin et al.(2017)
FOXD2_eDBD_Methyl-HT-SELEX_2
0.692 0.698
FOXD3
M03044_2.00
Homo sapiens
NRTMAAYRTTWDYN

NRHWAAYRTTKAYN
SELEX
Jolma et al.(2013)
FOXD3_1
0.690 0.698
FOXD3
M03045_2.00
Homo sapiens
RTAAAYA

TRTTTAY
SELEX
Jolma et al.(2013)
FOXD3_2
0.690 0.698
FOXD3
M04855_2.00
Homo sapiens
VHWRHRTAMACW

WGTKTAYDYWDB
SELEX
Yin et al.(2017)
FOXD3_eDBD_HT-SELEX
0.690 0.698
Foxd3
M09114_2.00
Mus musculus
DVNWRDRNAAACAVN

NBTGTTTNYHYWNBH
Misc
Kulakovskiy et al.(2013)
FOXD3_MOUSE.H11MO.0.C
0.690 0.698
FOXD3
M10565_2.00
Homo sapiens
RADHAAAYAWWH

DWWTRTTTDHTY
Transfac
Matys et al.(2006)
V$FOXD3_01
0.690 0.698
FOXD3
M10566_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HFH2_Q5
0.690 0.698
FOXD3
M04856_2.00
Homo sapiens
VYWRHRTAAACW

WGTTTAYDYWRB
SELEX
Yin et al.(2017)
FOXD3_eDBD_Methyl-HT-SELEX
0.690 0.698
Gm5294
M01984_2.00
Mus musculus
NNKRTAAACANN

NNTGTTTAYMNN
PBM
Weirauch et al.(2014)
pTH3802
0.687 0.616
FOXD4L4
M10564_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXD4L4_01
0.685 0.674
FOXC1
M00254_2.00
Homo sapiens
RRTAAACANN

NNTGTTTAYY
PBM
Barrera et al.(2016)
FOXC1_I126M
0.685 0.686
FOXL2
M04847_2.00
Homo sapiens
NVBGHMAACAH

DTGTTKDCVBN
SELEX
Yin et al.(2017)
FOXL2_FL_HT-SELEX
0.679 0.663
Foxl2
M09112_2.00
Mus musculus
DWDWRTAAACA

TGTTTAYWHWH
Misc
Kulakovskiy et al.(2013)
FOXL2_MOUSE.H11MO.0.C
0.679 0.663
FOXL2
M10560_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXL2_Q2
0.679 0.663
FOXL2
M10561_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXL2_Q5
0.679 0.663
FOXL2
M04848_2.00
Homo sapiens
HVCGWMAACAH

DTGTTKWCGBD
SELEX
Yin et al.(2017)
FOXL2_FL_Methyl-HT-SELEX
0.679 0.663
FOXJ3
M03046_2.00
Homo sapiens
RTAAAVAA

TTBTTTAY
SELEX
Jolma et al.(2013)
FOXJ3_1
0.678 0.605
FOXJ3
M03047_2.00
Homo sapiens
GTAAACARTMAACA

TGTTKAYTGTTTAC
SELEX
Jolma et al.(2013)
FOXJ3_2
0.678 0.605
FOXJ3
M03048_2.00
Homo sapiens
GTAAACATAAACA

TGTTTATGTTTAC
SELEX
Jolma et al.(2013)
FOXJ3_3
0.678 0.605
FOXJ3
M02736_2.00
Homo sapiens
AAACAATAAACA

TGTTTATTGTTT
SELEX
Jolma et al.(2010)
FOXJ3_dimer
0.678 0.605
FOXJ3
M02737_2.00
Homo sapiens
RTAAACAW

WTGTTTAY
SELEX
Jolma et al.(2010)
FOXJ3_monomer
0.678 0.605
FOXJ3
M04859_2.00
Homo sapiens
DYGTMAACAH

DTGTTKACRH
SELEX
Yin et al.(2017)
FOXJ3_eDBD_HT-SELEX
0.678 0.605
FOXJ3
M09098_2.00
Homo sapiens
WAAMMATAAACAN

NTGTTTATKKTTW
Misc
Kulakovskiy et al.(2013)
FOXJ3_HUMAN.H11MO.0.A
0.678 0.605
FOXJ3
M04860_2.00
Homo sapiens
RYGTMAACAH

DTGTTKACRY
SELEX
Yin et al.(2017)
FOXJ3_eDBD_Methyl-HT-SELEX
0.678 0.605
Foxj3
M00160_2.00
Mus musculus
NRTAAACAHN

NDTGTTTAYN
PBM
Badis et al.(2009)
Foxj3_0982
0.677 0.605
Foxj3
M01981_2.00
Mus musculus
VNHHAYANN

NNTRTDDNB
PBM
Weirauch et al.(2014)
pTH6591
0.677 0.605
Foxj3
M03055_2.00
Mus musculus
ACGGACACAAT

ATTGTGTCCGT
SELEX
Jolma et al.(2013)
Foxj3_1
0.677 0.605
Foxj3
M03056_2.00
Mus musculus
GTAAACARTMAACA

TGTTKAYTGTTTAC
SELEX
Jolma et al.(2013)
Foxj3_2
0.677 0.605
Foxj3
M03057_2.00
Mus musculus
RTAAACAW

WTGTTTAY
SELEX
Jolma et al.(2013)
Foxj3_3
0.677 0.605
Foxj3
M03058_2.00
Mus musculus
RTAAACAWAAACA

TGTTTWTGTTTAY
SELEX
Jolma et al.(2013)
Foxj3_4
0.677 0.605
Foxj3
M09102_2.00
Mus musculus
WAAMMATAAACAN

NTGTTTATKKTTW
Misc
Kulakovskiy et al.(2013)
FOXJ3_MOUSE.H11MO.0.A
0.677 0.605
fd59A
M03739_2.00
Drosophila melanogaster
HWAWRTAAACAWW

WWTGTTTAYWTWD
SELEX
Nitta et al.(2015)
fd59A_1
0.674 0.651
fd59A
M03740_2.00
Drosophila melanogaster
WWAVAATAACAHN

NDTGTTATTBTWW
SELEX
Nitta et al.(2015)
fd59A_2
0.674 0.651
fd59A
M03741_2.00
Drosophila melanogaster
YWRWRTAAAYAHH

DDTRTTTAYWYWR
SELEX
Nitta et al.(2015)
fd59A_3
0.674 0.651
fd59A
M03742_2.00
Drosophila melanogaster
MWACAAYAAYAHW

WDTRTTRTTGTWK
SELEX
Nitta et al.(2015)
fd59A_4
0.674 0.651
FOXK2
M08118_2.00
Homo sapiens
NNRTAAACANN

NNTGTTTAYNN
ChIP-seq
Mathelier et al.(2014)
MA1103.1
0.672 0.605
SPU_007644
M01987_2.00
Strongylocentrotus purpuratus
NNHHAYDNN

NNHRTDDNN
PBM
Weirauch et al.(2014)
pTH6497
0.665 0.616
For this family, TFs with SR scores > 0.664 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG017380.1 Forkhead 87 175

Links

Other Forkhead family TFs
Other Alligator sinensis TFs

1386 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N 0.000
cassava13512.valid.m1 Manihot esculenta cassava13512.valid.m1 N 0.000
cassava13513.valid.m1 Manihot esculenta cassava13513.valid.m1 N 0.000
cassava5958.m1 Manihot esculenta cassava5958.m1 N 0.000
Ca_06682 Cicer arietinum Ca_06682 N 0.000
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N 0.000
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N 0.000
evm.TU.supercontig_10.263 Carica papaya evm.TU.supercontig_10.263 N 0.000
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.000
GLYMA04G23780 Glycine max GLYMA04G23780 N 0.000
GLYMA04G23980 Glycine max GLYMA04G23980 N 0.000
GLYMA06G25310 Glycine max GLYMA06G25310 N 0.000
GLYMA06G30350 Glycine max GLYMA06G30350 N 0.000
GLYMA06G30590 Glycine max GLYMA06G30590 N 0.000
Gorai.010G062800 Gossypium raimondii Gorai.010G062800 N 0.000
MDP0000152128 Malus domestica MDP0000152128 N 0.000
MDP0000301302 Malus domestica MDP0000301302 N 0.000
MDP0000375866 Malus domestica MDP0000375866 N 0.000
MDP0000574053 Malus domestica MDP0000574053 N 0.000
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N 0.000
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N 0.000
PK04144.1 Cannabis sativa PK04144.1 N 0.000
Pm027560 Prunus mume Pm027560 N 0.000
POPTR_0018s12980 Populus trichocarpa POPTR_0018s12980 N 0.000
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N 0.000
SapurV1A.0034s0480 Salix purpurea SapurV1A.0034s0480 N 0.000
SapurV1A.1100s0070 Salix purpurea SapurV1A.1100s0070 N 0.000
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N 0.000
TCM_038107 Theobroma cacao TCM_038107 N 0.000
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N 0.000