CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh2_kg.C_80001
(
Branchiostoma floridae
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00250 (Forkhead)
IPR001766
estExt_fgenesh2_kg.C_80001
T189279_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
fd102C
M03750_2.00
Drosophila melanogaster
SCGAAGRACSKCAAGN
NCTTGMSGTYCTTCGS
SELEX
Nitta et al.(2015)
fd102C_1
0.679
0.726
fd102C
M03751_2.00
Drosophila melanogaster
CGAAGRACSK
MSGTYCTTCG
SELEX
Nitta et al.(2015)
fd102C_2
0.679
0.726
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_kg.C_80001
Forkhead
83
170
KPRHSYIALIAMAIMSSKDKRLLLGDIYQWIMDNFPFYRNNERSWRNSIRHNLSLNDCFIKAGRSQDGKGNYWAIHPANMEDFSRGDF
Links
Other
Forkhead
family TFs
Other
Branchiostoma floridae
TFs
84 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy