CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_gwp.C_60230
(
Branchiostoma floridae
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00250 (Forkhead)
IPR001766
estExt_gwp.C_60230
T189311_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
FOXQ1
M04823_2.00
Homo sapiens
YWRHRTAAACWD
HWGTTTAYDYWR
SELEX
Yin et al.(2017)
FOXQ1_eDBD_HT-SELEX
0.747
0.860
FOXQ1
M09093_2.00
Homo sapiens
RMATAAACAAYD
HRTTGTTTATKY
Misc
Kulakovskiy et al.(2013)
FOXQ1_HUMAN.H11MO.0.C
0.747
0.860
Foxq1
M09105_2.00
Mus musculus
RMATAAACAAYD
HRTTGTTTATKY
Misc
Kulakovskiy et al.(2013)
FOXQ1_MOUSE.H11MO.0.C
0.747
0.860
FOXQ1_RAT
M10572_2.00
Rattus norvegicus
AWATAAACAWTN
NAWTGTTTAKWT
Transfac
Matys et al.(2006)
V$HFH1_01
0.747
0.860
FOXQ1
M04824_2.00
Homo sapiens
YWAYRTAAACWD
HWGTTTAYRTWR
SELEX
Yin et al.(2017)
FOXQ1_eDBD_Methyl-HT-SELEX
0.747
0.860
fd64A
M06197_2.00
Drosophila melanogaster
KVWAAACA
TGTTTWBM
B1H
Zhu et al.(2011)
fd64A_SANGER_5_FBgn0004895
0.688
0.535
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_gwp.C_60230
Forkhead
98
188
KPPFSYIALIAMAIRDSPNNRLTLAEINDYLMKKFEFFRGPYTGWRNSVRHNLSLNECFTKVLRDPSRPWGKDNYWTINPNSEYTFADGVF
Links
Other
Forkhead
family TFs
Other
Branchiostoma floridae
TFs
92 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy