CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SNAPOd2T00022256001
(
Oikopleura dioica
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00250 (Forkhead)
IPR001766
SNAPOd2T00022256001
T189658_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
croc
M03744_2.00
Drosophila melanogaster
WRYGTMAACAH
DTGTTKACRYW
SELEX
Nitta et al.(2015)
croc_1
0.739
0.720
croc
M10571_2.00
Drosophila melanogaster
HWNARTAAATAKNNNV
BNNNMTATTTAYYNWD
Transfac
Matys et al.(2006)
I$CROC_01
0.739
0.720
FOXC1
M00257_2.00
Homo sapiens
NNNVHHAAYA
TRTTDDBNNN
PBM
Barrera et al.(2016)
FOXC1_REF
0.727
0.744
Foxc1
M01982_2.00
Mus musculus
HNNRHMAAYA
TRTTKDYNND
PBM
Weirauch et al.(2014)
pTH2673
0.727
0.744
FOXC1
M03013_2.00
Homo sapiens
AWRTAAAYAAAYA
TRTTTRTTTAYWT
SELEX
Jolma et al.(2013)
FOXC1_1
0.727
0.744
FOXC1
M03014_2.00
Homo sapiens
NRWMAATATTKWYN
NRWMAATATTKWYN
SELEX
Jolma et al.(2013)
FOXC1_2
0.727
0.744
FOXC1
M03015_2.00
Homo sapiens
WRWRTMAAYAW
WTRTTKAYWYW
SELEX
Jolma et al.(2013)
FOXC1_3
0.727
0.744
Foxc1
M03059_2.00
Mus musculus
RTAAAYAAACA
TGTTTRTTTAY
SELEX
Jolma et al.(2013)
Foxc1_1
0.727
0.744
Foxc1
M03060_2.00
Mus musculus
RTAAACA
TGTTTAY
SELEX
Jolma et al.(2013)
Foxc1_2
0.727
0.744
FOXC1
M09083_2.00
Homo sapiens
SBWAWRTAAACADHN
NDHTGTTTAYWTWVS
Misc
Kulakovskiy et al.(2013)
FOXC1_HUMAN.H11MO.0.C
0.727
0.744
Foxc1
M09111_2.00
Mus musculus
SBWAWRTAAACADHN
NDHTGTTTAYWTWVS
Misc
Kulakovskiy et al.(2013)
FOXC1_MOUSE.H11MO.0.C
0.727
0.744
FOXC1
M10525_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXC1_Q4
0.727
0.744
FOXC1
M10526_2.00
Homo sapiens
TSTTTATTTACDBNVN
NBNVHGTAAATAAASA
Transfac
Matys et al.(2006)
V$FREAC3_01
0.727
0.744
FOXC1
M00255_2.00
Homo sapiens
NRTATATWHNNN
NNNDWATATAYN
PBM
Barrera et al.(2016)
FOXC1_L130F
0.727
0.744
FOXC1
M00253_2.00
Homo sapiens
NNHATAAWHAN
NTDWTTATDNN
PBM
Barrera et al.(2016)
FOXC1_F112S
0.727
0.732
FOXC1
M00256_2.00
Homo sapiens
NNNNWWTYAMAWN
NWTKTRAWWNNNN
PBM
Barrera et al.(2016)
FOXC1_P79L
0.727
0.732
FOXC1
M00258_2.00
Homo sapiens
NNNAMAAYANN
NNTRTTKTNNN
PBM
Barrera et al.(2016)
FOXC1_S131L
0.727
0.732
FOXC1
M00259_2.00
Homo sapiens
RTAAACAW
WTGTTTAY
PBM
Barrera et al.(2016)
FOXC1_S82T
0.727
0.732
FOXC1
M00254_2.00
Homo sapiens
RRTAAACANN
NNTGTTTAYY
PBM
Barrera et al.(2016)
FOXC1_I126M
0.703
0.732
Foxc2
M00796_2.00
Mus musculus
HNNRHMAAYA
TRTTKDYNND
PBM
Weirauch et al.(2013)
pTH3796
0.695
0.720
FOXC2
M03036_2.00
Homo sapiens
NRTMAATATTDWYN
NRWHAATATTKAYN
SELEX
Jolma et al.(2013)
FOXC2_1
0.695
0.720
FOXC2
M03037_2.00
Homo sapiens
RTAAAYAAACA
TGTTTRTTTAY
SELEX
Jolma et al.(2013)
FOXC2_2
0.695
0.720
FOXC2
M03038_2.00
Homo sapiens
WAHRTMAAYAWW
WWTRTTKAYDTW
SELEX
Jolma et al.(2013)
FOXC2_3
0.695
0.720
FOXC2
M04841_2.00
Homo sapiens
NHVNRYMAACAH
DTGTTKRYNBDN
SELEX
Yin et al.(2017)
FOXC2_eDBD_HT-SELEX_1
0.695
0.720
FOXC2
M04842_2.00
Homo sapiens
RHAMAYAAACAH
DTGTTTRTKTDY
SELEX
Yin et al.(2017)
FOXC2_eDBD_HT-SELEX_2
0.695
0.720
FOXC2
M10559_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FKHL14_Q2
0.695
0.720
FOXC2
M04843_2.00
Homo sapiens
NHNNRYMAACAN
NTGTTKRYNNDN
SELEX
Yin et al.(2017)
FOXC2_eDBD_Methyl-HT-SELEX_1
0.695
0.720
FOXC2
M04844_2.00
Homo sapiens
VHMMAYAAACAN
NTGTTTRTKKDB
SELEX
Yin et al.(2017)
FOXC2_eDBD_Methyl-HT-SELEX_2
0.695
0.720
fd64A
M06197_2.00
Drosophila melanogaster
KVWAAACA
TGTTTWBM
B1H
Zhu et al.(2011)
fd64A_SANGER_5_FBgn0004895
0.678
0.683
Foxl1
M00164_2.00
Mus musculus
NNNRTMAAYA
TRTTKAYNNN
PBM
Badis et al.(2009)
Foxl1_2809
0.671
0.646
FOXL1
M03034_2.00
Homo sapiens
RTAAACA
TGTTTAY
SELEX
Jolma et al.(2013)
FOXL1_1
0.671
0.634
FOXL1
M03035_2.00
Homo sapiens
NRTAAAYAAAYAN
NTRTTTRTTTAYN
SELEX
Jolma et al.(2013)
FOXL1_2
0.671
0.634
FOXL1
M10558_2.00
Homo sapiens
DHNVHATAAAYAHNNN
NNNDTRTTTATDBNDH
Transfac
Matys et al.(2006)
V$FREAC7_01
0.671
0.634
FOXE1
M04845_2.00
Homo sapiens
BVYTAWRYAAACADN
NHTGTTTRYWTARBV
SELEX
Yin et al.(2017)
FOXE1_eDBD_HT-SELEX
0.666
0.610
FOXE1
M04846_2.00
Homo sapiens
BVYTAARYAAACAWH
DWTGTTTRYTTARBV
SELEX
Yin et al.(2017)
FOXE1_eDBD_Methyl-HT-SELEX
0.666
0.610
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SNAPOd2T00022256001
Forkhead
12
97
KPPYSYIALISMAINSKKDRRITLSGIYKFISDKFPYYRDTKQGWQNSISLNECFIKEARIDKKRGKGSFWTLDPDAFNMFENGSY
Links
Other
Forkhead
family TFs
Other
Oikopleura dioica
TFs
424 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy