foxa2 (Xenopus tropicalis)
Forkhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00250 (Forkhead) IPR001766 XB-GENE-480476 T189674_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Foxa2
M00162_2.00
Mus musculus
GTAAAYAW

WTRTTTAC
PBM
Badis et al.(2009)
Foxa2_2830
0.910 1.000
FOXA2
M04815_2.00
Homo sapiens
NHVNRYMAATATTKACNNDN

NHNNGTMAATATTKRYNBDN
SELEX
Yin et al.(2017)
FOXA2_eDBD_HT-SELEX
0.910 1.000
Foxa2
M08121_2.00
Mus musculus
TRTTTACWYWDN

NHWRWGTAAAYA
ChIP-seq
Mathelier et al.(2014)
MA0047.2
0.910 1.000
FOXA2
M07959_2.00
Homo sapiens
NNWRWGYAAAYANNN

NNNTRTTTRCWYWNN
ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA2_HudsonAlpha
0.910 1.000
FOXA2
M09088_2.00
Homo sapiens
NHWRWGTAAACA

TGTTTACWYWDN
Misc
Kulakovskiy et al.(2013)
FOXA2_HUMAN.H11MO.0.A
0.910 1.000
Foxa2
M09104_2.00
Mus musculus
BNHTRTTKACWYW

WRWGTMAAYADNV
Misc
Kulakovskiy et al.(2013)
FOXA2_MOUSE.H11MO.0.A
0.910 1.000
FOXA2
M09542_2.00
Homo sapiens
WVWGTMAACANV

BNTGTTKACWBW
Misc
Heinz et al.(2010)
Liver-Foxa2_GSE25694
0.910 1.000
FOXA2
M10540_2.00
Homo sapiens
WAARYAAAYADKNMV

BKNMHTRTTTRYTTW
Transfac
Matys et al.(2006)
V$HNF3B_01
0.910 1.000
FOXA2
M10541_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3B_Q6
0.910 1.000
AAA20679
M10575_2.00
Xenopus laevis
WNWGTMAACAWWMW

WKWWTGTTKACWNW
Transfac
Matys et al.(2006)
V$XFD3_01
0.910 1.000
FOXA2
M04816_2.00
Homo sapiens
NWRNRYMAATATTKACWNWN

NWNWGTMAATATTKRYNYWN
SELEX
Yin et al.(2017)
FOXA2_eDBD_Methyl-HT-SELEX
0.910 1.000
FOXA1
M04817_2.00
Homo sapiens
NTRTKTACMYWN

NWRKGTAMAYAN
SELEX
Yin et al.(2017)
FOXA1_eDBD_HT-SELEX
0.842 0.930
FOXA1
M04819_2.00
Homo sapiens
BVYTAWGTAAACAAWN

NWTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_1
0.842 0.930
FOXA1
M04820_2.00
Homo sapiens
HWRWRYAAATATTKACWYWR

YWRWGTMAATATTTRYWYWD
SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_2
0.842 0.930
FOXA1
M08117_2.00
Homo sapiens
NNNNTRTTTACWYWD

HWRWGTAAAYANNNN
ChIP-seq
Mathelier et al.(2014)
MA0148.3
0.842 0.930
FOXA1
M07960_2.00
Homo sapiens
NNYWRWGYAAACANN

NNTGTTTRCWYWRNN
ChIP-seq
Gerstein et al.(2012)
ECC-1_FOXA1_HudsonAlpha
0.842 0.930
FOXA1
M07961_2.00
Homo sapiens
HWRWGTAAAYA

TRTTTACWYWD
ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA1_HudsonAlpha
0.842 0.930
FOXA1
M07962_2.00
Homo sapiens
NWVWGTAAACA

TGTTTACWBWN
ChIP-seq
Gerstein et al.(2012)
T-47D_FOXA1_HudsonAlpha
0.842 0.930
FOXA1
M08199_2.00
Homo sapiens
BWRDGTAAACANN

NNTGTTTACHYWV
ChIP-seq
Contrino et al.(2012)
Mv69
0.842 0.930
FOXA1
M08028_2.00
Homo sapiens
WRWRYAAAYA

TRTTTRYWYW
ChIP-seq
Chen et al.(2011)
GSE15244_FoxA1
0.842 0.930
FOXA1
M09090_2.00
Homo sapiens
VHWRWGTAAACA

TGTTTACWYWDB
Misc
Kulakovskiy et al.(2013)
FOXA1_HUMAN.H11MO.0.A
0.842 0.930
Foxa1
M09103_2.00
Mus musculus
TRTTKACWYW

WRWGTMAAYA
Misc
Kulakovskiy et al.(2013)
FOXA1_MOUSE.H11MO.0.A
0.842 0.930
FOXA1
M09544_2.00
Homo sapiens
WGCCAARRYAAAYANN

NNTRTTTRYYTTGGCW
Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_2
0.842 0.930
FOXA1
M09543_2.00
Homo sapiens
WRWGTAAACA

TGTTTACWYW
Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_1
0.842 0.930
FOXA1
M09545_2.00
Homo sapiens
WRWGTAAAYA

TRTTTACWYW
Misc
Heinz et al.(2010)
MCF7-FOXA1_GSE26831
0.842 0.930
FOXA1
M10542_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXA1_02
0.842 0.930
FOXA1
M10543_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXA1_03
0.842 0.930
FOXA1
M10544_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3A_01
0.842 0.930
FOXA1
M10545_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3ALPHA_Q6
0.842 0.930
FOXA1
M10546_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3A_Q6
0.842 0.930
FOXA1
M04818_2.00
Homo sapiens
NWRDGYMAAYAW

WTRTTKRCHYWN
SELEX
Yin et al.(2017)
FOXA1_eDBD_Methyl-HT-SELEX
0.842 0.930
FOXA1
M04821_2.00
Homo sapiens
BVYTAWGTAAACAAWV

BWTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_1
0.842 0.930
FOXA1
M04822_2.00
Homo sapiens
YTRWRYAAATATTTACWYAR

YTRWGTAAATATTTRYWYAR
SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_2
0.842 0.930
fkh
M03734_2.00
Drosophila melanogaster
WRWGYMAATATTKRCWYW

WRWGYMAATATTKRCWYW
SELEX
Nitta et al.(2015)
fkh_1
0.835 0.907
fkh
M03735_2.00
Drosophila melanogaster
HWASAATAAYAWT

AATRTTATTSTWD
SELEX
Nitta et al.(2015)
fkh_2
0.835 0.907
fkh
M06473_2.00
Drosophila melanogaster
NTRDDYAAACA

TGTTTRHHYAN
B1H
Mathelier et al.(2014)
MA0446.1
0.835 0.907
fkh
M06194_2.00
Drosophila melanogaster
NTRDDYAAACA

TGTTTRHHYAN
B1H
Zhu et al.(2011)
fkh_NAR_FBgn0000659
0.835 0.907
fkh
M08200_2.00
Drosophila melanogaster
NTRDDYAAACA

TGTTTRHHYAN
ChIP-seq
Contrino et al.(2012)
Mf15
0.835 0.907
fkh
M09668_2.00
Drosophila melanogaster
TRTTTRCAHAAG

CTTDTGYAAAYA
Misc
Kulakovskiy et al.(2009)
fkh
0.835 0.907
FOXA3
M04831_2.00
Homo sapiens
BVYTAWGTAAACAAAN

NTTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA3_FL_HT-SELEX_1
0.834 0.895
FOXA3
M04832_2.00
Homo sapiens
HWRWGYAAATATTKACWYWD

HWRWGTMAATATTTRCWYWD
SELEX
Yin et al.(2017)
FOXA3_FL_HT-SELEX_2
0.834 0.895
FOXA3
M09096_2.00
Homo sapiens
HWRWGTMAAYADN

NHTRTTKACWYWD
Misc
Kulakovskiy et al.(2013)
FOXA3_HUMAN.H11MO.0.B
0.834 0.895
Foxa3
M09106_2.00
Mus musculus
HWRWGTMAAYADN

NHTRTTKACWYWD
Misc
Kulakovskiy et al.(2013)
FOXA3_MOUSE.H11MO.0.A
0.834 0.895
FOXA3
M10557_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3G_Q4
0.834 0.895
FOXA3
M04833_2.00
Homo sapiens
CVYTAWGTAAACAAWB

VWTTGTTTACWTARBG
SELEX
Yin et al.(2017)
FOXA3_FL_Methyl-HT-SELEX_1
0.834 0.895
FOXA3
M04834_2.00
Homo sapiens
HWRWGYAAATATTKACWYWD

HWRWGTMAATATTTRCWYWD
SELEX
Yin et al.(2017)
FOXA3_FL_Methyl-HT-SELEX_2
0.834 0.895
Q2L6N7_PELSI
M01990_2.00
Trionyx sinensis
KTRTTTACA

TGTAAAYAM
PBM
Weirauch et al.(2014)
pTH5334
0.829 0.872
pha-4
M08123_2.00
Caenorhabditis elegans
WRWGYAAAYA

TRTTTRCWYW
ChIP-seq
Mathelier et al.(2014)
MA0546.1
0.773 0.837
pha-4
M08201_2.00
Caenorhabditis elegans
GTAAACAR

YTGTTTAC
ChIP-seq
Contrino et al.(2012)
Mw164
0.773 0.837
pha-4
M09548_2.00
Caenorhabditis elegans
RYAMAYAN

NTRTKTRY
Misc
Heinz et al.(2010)
cElegans-Embryos-PHA4_modEncode
0.773 0.837
Foxb1
M01983_2.00
Mus musculus
TRTTKAYWYW

WRWRTMAAYA
PBM
Weirauch et al.(2014)
pTH2808
0.713 0.756
FOXB1
M03028_2.00
Homo sapiens
GAATGACACRGCKV

BMGCYGTGTCATTC
SELEX
Jolma et al.(2013)
FOXB1_1
0.713 0.756
FOXB1
M03029_2.00
Homo sapiens
WRWGTMAATATTKACWYW

WRWGTMAATATTKACWYW
SELEX
Jolma et al.(2013)
FOXB1_2
0.713 0.756
FOXB1
M03030_2.00
Homo sapiens
WTRTTKACWTW

WAWGTMAAYAW
SELEX
Jolma et al.(2013)
FOXB1_3
0.713 0.756
FOXB1
M03031_2.00
Homo sapiens
NTRTTTACW

WGTAAAYAN
SELEX
Jolma et al.(2013)
FOXB1_4
0.713 0.756
FOXB1
M04837_2.00
Homo sapiens
NWRDGYMAATATTKRCWYWD

HWRWGYMAATATTKRCHYWN
SELEX
Yin et al.(2017)
FOXB1_eDBD_HT-SELEX
0.713 0.756
FOXB1
M04838_2.00
Homo sapiens
NWRNGYMAATATTKRCDYWD

HWRHGYMAATATTKRCNYWN
SELEX
Yin et al.(2017)
FOXB1_eDBD_Methyl-HT-SELEX
0.713 0.756
fd96Ca
M03743_2.00
Drosophila melanogaster
WRWGYMAATATTKRCWYW

WRWGYMAATATTKRCWYW
SELEX
Nitta et al.(2015)
fd96Ca_1
0.705 0.698
fd64A
M06197_2.00
Drosophila melanogaster
KVWAAACA

TGTTTWBM
B1H
Zhu et al.(2011)
fd64A_SANGER_5_FBgn0004895
0.703 0.616
For this family, TFs with SR scores > 0.664 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH88590 Forkhead 144 233
AAI70757 Forkhead 149 238
AAI71324 Forkhead 149 238
AAP82293 Forkhead 149 238
CAJ82886 Forkhead 149 238

Links

Other Forkhead family TFs
Other Xenopus tropicalis TFs

599 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZNF202 Homo sapiens ENSG00000166261 D 0.000
ENSAMEG00000008512 Ailuropoda melanoleuca ENSAMEG00000008512 I 0.000
ZNF202 Otolemur garnettii ENSOGAG00000026373 I 0.000
ENSPANG00000004921 Papio anubis ENSPANG00000004921 I 0.000
ENSPPYG00000003989 Pongo abelii ENSPPYG00000003989 I 0.000
ZNF202 Pan troglodytes ENSPTRG00000004409 I 0.000
ENSSHAG00000009268 Sarcophilus harrisii ENSSHAG00000009268 I 0.000
ZNF202 Sus scrofa ENSSSCG00000015145 I 0.000
ENSSTOG00000027536 Ictidomys tridecemlineatus ENSSTOG00000027536 I 0.000
ZNF202 Tupaia belangeri ENSTBEG00000011372 I 0.000
ENSTSYG00000010154 Tarsius syrichta ENSTSYG00000010154 I 0.000
ZNF202 Tursiops truncatus ENSTTRG00000011530 I 0.000
ZNF202 Vicugna pacos ENSVPAG00000004840 I 0.000
ENSBTAP00000022184-D1 Bos grunniens ENSBTAP00000022184-D1 I 0.000
ZNF202 Oryctolagus cuniculus ENSOCUG00000014264 I 0.000
ENSOARG00000000770 Ovis aries ENSOARG00000000770 I 0.000
ZNF202 Bos taurus ENSBTAG00000016684 I 0.000
ZNF202 Canis familiaris ENSCAFG00000011509 I 0.000
ZNF202 Choloepus hoffmanni ENSCHOG00000007537 I 0.000
ZNF202 Callithrix jacchus ENSCJAG00000007782 I 0.000
ENSCSAG00000002403 Chlorocebus sabaeus ENSCSAG00000002403 I 0.000
ZNF202 Dasypus novemcinctus ENSDNOG00000031856 I 0.000
ZNF202 Equus caballus ENSECAG00000024393 I 0.000
ZNF202 Gorilla gorilla ENSGGOG00000006891 I 0.000
ZNF202 Loxodonta africana ENSLAFG00000008599 I 0.000
ZNF202 Microcebus murinus ENSMICG00000007659 I 0.000
ZNF202 Macaca mulatta ENSMMUG00000010646 I 0.000
ENSMPUG00000005930 Mustela putorius furo ENSMPUG00000005930 I 0.000
ENSP00000337724 Macaca fascicularis ENSP00000337724 I 0.000