foxa1.L (Xenopus laevis)
Forkhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00250 (Forkhead) IPR001766 XB-GENE-487356 T189692_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q2L6N7_PELSI
M01990_2.00
Trionyx sinensis
KTRTTTACA

TGTAAAYAM
PBM
Weirauch et al.(2014)
pTH5334
0.422 1.000
FOXA1
M04817_2.00
Homo sapiens
NTRTKTACMYWN

NWRKGTAMAYAN
SELEX
Yin et al.(2017)
FOXA1_eDBD_HT-SELEX
0.422 1.000
FOXA1
M04819_2.00
Homo sapiens
BVYTAWGTAAACAAWN

NWTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_1
0.422 1.000
FOXA1
M04820_2.00
Homo sapiens
HWRWRYAAATATTKACWYWR

YWRWGTMAATATTTRYWYWD
SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_2
0.422 1.000
FOXA1
M08117_2.00
Homo sapiens
NNNNTRTTTACWYWD

HWRWGTAAAYANNNN
ChIP-seq
Mathelier et al.(2014)
MA0148.3
0.422 1.000
FOXA1
M07960_2.00
Homo sapiens
NNYWRWGYAAACANN

NNTGTTTRCWYWRNN
ChIP-seq
Gerstein et al.(2012)
ECC-1_FOXA1_HudsonAlpha
0.078 1.000
FOXA1
M07961_2.00
Homo sapiens
HWRWGTAAAYA

TRTTTACWYWD
ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA1_HudsonAlpha
0.422 1.000
FOXA1
M07962_2.00
Homo sapiens
NWVWGTAAACA

TGTTTACWBWN
ChIP-seq
Gerstein et al.(2012)
T-47D_FOXA1_HudsonAlpha
0.422 1.000
FOXA1
M08199_2.00
Homo sapiens
BWRDGTAAACANN

NNTGTTTACHYWV
ChIP-seq
Contrino et al.(2012)
Mv69
0.422 1.000
FOXA1
M08028_2.00
Homo sapiens
WRWRYAAAYA

TRTTTRYWYW
ChIP-seq
Chen et al.(2011)
GSE15244_FoxA1
0.422 1.000
FOXA1
M09090_2.00
Homo sapiens
VHWRWGTAAACA

TGTTTACWYWDB
Misc
Kulakovskiy et al.(2013)
FOXA1_HUMAN.H11MO.0.A
0.422 1.000
Foxa1
M09103_2.00
Mus musculus
TRTTKACWYW

WRWGTMAAYA
Misc
Kulakovskiy et al.(2013)
FOXA1_MOUSE.H11MO.0.A
0.422 1.000
FOXA1
M09544_2.00
Homo sapiens
WGCCAARRYAAAYANN

NNTRTTTRYYTTGGCW
Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_2
0.422 1.000
FOXA1
M09543_2.00
Homo sapiens
WRWGTAAACA

TGTTTACWYW
Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_1
0.078 1.000
FOXA1
M09545_2.00
Homo sapiens
WRWGTAAAYA

TRTTTACWYW
Misc
Heinz et al.(2010)
MCF7-FOXA1_GSE26831
0.422 1.000
FOXA1
M10542_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXA1_02
0.422 1.000
FOXA1
M10543_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXA1_03
0.422 1.000
FOXA1
M10544_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3A_01
0.422 1.000
FOXA1
M10545_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3ALPHA_Q6
0.422 1.000
FOXA1
M10546_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3A_Q6
0.422 1.000
FOXA1
M04818_2.00
Homo sapiens
NWRDGYMAAYAW

WTRTTKRCHYWN
SELEX
Yin et al.(2017)
FOXA1_eDBD_Methyl-HT-SELEX
0.422 1.000
FOXA1
M04821_2.00
Homo sapiens
BVYTAWGTAAACAAWV

BWTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_1
0.078 1.000
FOXA1
M04822_2.00
Homo sapiens
YTRWRYAAATATTTACWYAR

YTRWGTAAATATTTRYWYAR
SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_2
0.422 1.000
For this family, TFs with SR scores > 0.664 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAA85028 Forkhead 1 31
AAI28690 Forkhead 159 200

Links

Other Forkhead family TFs
Other Xenopus laevis TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
FOXA1 Pteropus vampyrus ENSPVAG00000014588 I 0.422
Foxa1 Rattus norvegicus ENSRNOG00000009284 I 0.422
FOXA1 Sorex araneus ENSSARG00000008208 I 0.422
ENSSHAG00000001593 Sarcophilus harrisii ENSSHAG00000001593 I 0.422
FOXA1 Pan troglodytes ENSPTRG00000006285 I 0.422
ENSPSIG00000011490 Pelodiscus sinensis ENSPSIG00000011490 I 0.422
FOXA1 Otolemur garnettii ENSOGAG00000031319 I 0.422
ENSPANG00000015153 Papio anubis ENSPANG00000015153 I 0.422
ENSPPYG00000005758 Pongo abelii ENSPPYG00000005758 I 0.422
ENSSSCG00000001940 Sus scrofa ENSSSCG00000001940 I 0.422
ENSSTOG00000023537 Ictidomys tridecemlineatus ENSSTOG00000023537 I 0.422
Gfo_R012942 Geospiza fortis Gfo_R012942 I 0.422
Ogr19511 Ophisaurus gracilis Ogr19511 I 0.422
foxa1.S Xenopus laevis XB-GENE-6256649 I 0.422
ENSP00000315955-D2 Bos grunniens ENSP00000315955-D2 I 0.422
Cmyd_10014568 Chelonia mydas Cmyd_10014568 I 0.422
FOXA1 Tursiops truncatus ENSTTRG00000002855 I 0.422
ENSVPAG00000009933 Vicugna pacos ENSVPAG00000009933 I 0.422
Aan_R005715 Calypte anna Aan_R005715 I 0.422
ENSOARG00000008192 Ovis aries ENSOARG00000008192 I 0.422
Foxa1 Mus musculus ENSMUSG00000035451 D 0.422
FOXA1 Dasypus novemcinctus ENSDNOG00000032245 I 0.422
ENSFALG00000006161 Ficedula albicollis ENSFALG00000006161 I 0.422
FOXA1 Felis catus ENSFCAG00000028305 I 0.422
ENSCSAG00000015444 Chlorocebus sabaeus ENSCSAG00000015444 I 0.422
ENSCPOG00000026606 Cavia porcellus ENSCPOG00000026606 I 0.422
ENSAMEG00000008009 Ailuropoda melanoleuca ENSAMEG00000008009 I 0.422
FOXA1 Bos taurus ENSBTAG00000013888 I 0.422
FOXA1 Canis familiaris ENSCAFG00000013743 I 0.422
FOXA1 Homo sapiens ENSG00000129514 D 0.422
FOXA1 Gorilla gorilla ENSGGOG00000022617 I 0.422
FOXA1 Myotis lucifugus ENSMLUG00000029779 I 0.422
FOXA1 Macaca mulatta ENSMMUG00000009653 I 0.422
ENSMODG00000012030 Monodelphis domestica ENSMODG00000012030 I 0.422
ENSMPUG00000016255 Mustela putorius furo ENSMPUG00000016255 I 0.422
ENSMICG00000003135 Microcebus murinus ENSMICG00000003135 I 0.422
ENSMEUG00000000643 Macropus eugenii ENSMEUG00000000643 I 0.422
FOXA1 Anolis carolinensis ENSACAG00000001256 I 0.422
ENSLACG00000012599 Latimeria chalumnae ENSLACG00000012599 I 0.422
FOXA1 Loxodonta africana ENSLAFG00000000062 I 0.422
FOXA3 Homo sapiens ENSG00000170608 D 0.030