CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Minc04531
(
Meloidogyne incognita
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00250 (Forkhead)
IPR001766
Minc04531
T189803_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
slp2
M03738_2.00
Drosophila melanogaster
NNTRTTTACAACAHN
NDTGTTGTAAAYANN
SELEX
Nitta et al.(2015)
slp2_1
0.681
0.721
slp2
M06196_2.00
Drosophila melanogaster
RTAAACAV
BTGTTTAY
B1H
Zhu et al.(2011)
slp2_SANGER_5_FBgn0004567
0.681
0.721
FOXG1
M01978_2.00
Homo sapiens
RTAAACAH
DTGTTTAY
PBM
Weirauch et al.(2014)
pTH5501
0.678
0.733
Foxg1
M00791_2.00
Mus musculus
NNNNMHAYAN
NTRTDKNNNN
PBM
Weirauch et al.(2013)
pTH2846
0.678
0.733
FOXG1
M03032_2.00
Homo sapiens
RTAAACAATDGTAAACA
TGTTTACHATTGTTTAY
SELEX
Jolma et al.(2013)
FOXG1_1
0.678
0.733
FOXG1
M03033_2.00
Homo sapiens
RCGGACACAATR
YATTGTGTCCGY
SELEX
Jolma et al.(2013)
FOXG1_2
0.678
0.733
Foxg1
M03052_2.00
Mus musculus
ATAAACAAVTGTMAACA
TGTTKACABTTGTTTAT
SELEX
Jolma et al.(2013)
Foxg1_1
0.678
0.733
Foxg1
M03053_2.00
Mus musculus
MHGGACACAATC
GATTGTGTCCDK
SELEX
Jolma et al.(2013)
Foxg1_2
0.678
0.733
Foxg1
M03054_2.00
Mus musculus
GTAAACA
TGTTTAC
SELEX
Jolma et al.(2013)
Foxg1_3
0.678
0.733
FOXG1
M04839_2.00
Homo sapiens
NACRYMMACAH
DTGTKKRYGTN
SELEX
Yin et al.(2017)
FOXG1_eDBD_HT-SELEX
0.678
0.733
FOXG1
M04840_2.00
Homo sapiens
HRCGYMAACAH
DTGTTKRCGYD
SELEX
Yin et al.(2017)
FOXG1_eDBD_Methyl-HT-SELEX
0.678
0.733
foxg1a
M01985_2.00
Oryzias latipes
RTAAACAH
DTGTTTAY
PBM
Weirauch et al.(2014)
pTH6729
0.675
0.709
slp1
M01986_2.00
Drosophila melanogaster
NRTAAACANN
NNTGTTTAYN
PBM
Weirauch et al.(2014)
pTH6549
0.671
0.674
slp1
M03736_2.00
Drosophila melanogaster
WDYRTAAACAWW
WWTGTTTAYRHW
SELEX
Nitta et al.(2015)
slp1_1
0.671
0.674
slp1
M03737_2.00
Drosophila melanogaster
RTRTAAACAAAYADH
DHTRTTTGTTTAYAY
SELEX
Nitta et al.(2015)
slp1_2
0.671
0.674
slp1
M06474_2.00
Drosophila melanogaster
WRBVWAAACAH
DTGTTTWBVYW
B1H
Mathelier et al.(2014)
MA0458.1
0.671
0.674
slp1
M06195_2.00
Drosophila melanogaster
WRBVWAAACAH
DTGTTTWBVYW
B1H
Zhu et al.(2011)
slp1_NAR_FBgn0003430
0.671
0.674
slp1
M09669_2.00
Drosophila melanogaster
ATGTMAACAMAVV
BBTKTGTTKACAT
Misc
Kulakovskiy et al.(2009)
slp1
0.671
0.674
CBG14280
M01974_2.00
Caenorhabditis briggsae
RTAAACAN
NTGTTTAY
PBM
Weirauch et al.(2014)
pTH6734
0.670
0.651
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc04531
Forkhead
175
263
KPRYSYNALITMALRQSQTGRLTLNGIYEFIMRRFPFYKTNRRGWQNSIRHNLSLNKFFVKVARSYDDPGKGNYWMLDTSSENEIYIGA
Links
Other
Forkhead
family TFs
Other
Meloidogyne incognita
TFs
209 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy