CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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csin105615
(
Clonorchis sinensis
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00250 (Forkhead)
IPR001766
csin105615
T190390_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q2L6N7_PELSI
M01990_2.00
Trionyx sinensis
KTRTTTACA
TGTAAAYAM
PBM
Weirauch et al.(2014)
pTH5334
0.667
0.616
FOXA1
M04817_2.00
Homo sapiens
NTRTKTACMYWN
NWRKGTAMAYAN
SELEX
Yin et al.(2017)
FOXA1_eDBD_HT-SELEX
0.665
0.651
FOXA1
M04819_2.00
Homo sapiens
BVYTAWGTAAACAAWN
NWTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_1
0.665
0.651
FOXA1
M04820_2.00
Homo sapiens
HWRWRYAAATATTKACWYWR
YWRWGTMAATATTTRYWYWD
SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_2
0.665
0.651
FOXA1
M08117_2.00
Homo sapiens
NNNNTRTTTACWYWD
HWRWGTAAAYANNNN
ChIP-seq
Mathelier et al.(2014)
MA0148.3
0.665
0.651
FOXA1
M07960_2.00
Homo sapiens
NNYWRWGYAAACANN
NNTGTTTRCWYWRNN
ChIP-seq
Gerstein et al.(2012)
ECC-1_FOXA1_HudsonAlpha
0.665
0.651
FOXA1
M07961_2.00
Homo sapiens
HWRWGTAAAYA
TRTTTACWYWD
ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA1_HudsonAlpha
0.665
0.651
FOXA1
M07962_2.00
Homo sapiens
NWVWGTAAACA
TGTTTACWBWN
ChIP-seq
Gerstein et al.(2012)
T-47D_FOXA1_HudsonAlpha
0.665
0.651
FOXA1
M08199_2.00
Homo sapiens
BWRDGTAAACANN
NNTGTTTACHYWV
ChIP-seq
Contrino et al.(2012)
Mv69
0.665
0.651
FOXA1
M08028_2.00
Homo sapiens
WRWRYAAAYA
TRTTTRYWYW
ChIP-seq
Chen et al.(2011)
GSE15244_FoxA1
0.665
0.651
FOXA1
M09090_2.00
Homo sapiens
VHWRWGTAAACA
TGTTTACWYWDB
Misc
Kulakovskiy et al.(2013)
FOXA1_HUMAN.H11MO.0.A
0.665
0.651
Foxa1
M09103_2.00
Mus musculus
TRTTKACWYW
WRWGTMAAYA
Misc
Kulakovskiy et al.(2013)
FOXA1_MOUSE.H11MO.0.A
0.665
0.651
FOXA1
M09544_2.00
Homo sapiens
WGCCAARRYAAAYANN
NNTRTTTRYYTTGGCW
Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_2
0.665
0.651
FOXA1
M09543_2.00
Homo sapiens
WRWGTAAACA
TGTTTACWYW
Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_1
0.665
0.651
FOXA1
M09545_2.00
Homo sapiens
WRWGTAAAYA
TRTTTACWYW
Misc
Heinz et al.(2010)
MCF7-FOXA1_GSE26831
0.665
0.651
FOXA1
M10542_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXA1_02
0.665
0.651
FOXA1
M10543_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXA1_03
0.665
0.651
FOXA1
M10544_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3A_01
0.665
0.651
FOXA1
M10545_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3ALPHA_Q6
0.665
0.651
FOXA1
M10546_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3A_Q6
0.665
0.651
FOXA1
M04818_2.00
Homo sapiens
NWRDGYMAAYAW
WTRTTKRCHYWN
SELEX
Yin et al.(2017)
FOXA1_eDBD_Methyl-HT-SELEX
0.665
0.651
FOXA1
M04821_2.00
Homo sapiens
BVYTAWGTAAACAAWV
BWTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_1
0.665
0.651
FOXA1
M04822_2.00
Homo sapiens
YTRWRYAAATATTTACWYAR
YTRWGTAAATATTTRYWYAR
SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_2
0.665
0.651
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
csin105615
Forkhead
326
415
KPPFSYITLIVSAMSSKPSKQITLSEIYAWIMSTFAYYRKNTRRWQNSIRHALSFNDCFIKVPRPSGEAGKGSYWTVHPRAIDMFENGSS
Links
Other
Forkhead
family TFs
Other
Clonorchis sinensis
TFs
94 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
T265_08863
Opisthorchis viverrini
T265_08863
I
0.932
ECPE_0000936301
Echinostoma caproni
ECPE_0000936301
N
0.888
SCUD_0000195401
Schistosoma curassoni
SCUD_0000195401
N
0.867
SROB_0001069101
Schistosoma rodhaini
SROB_0001069101
N
0.867
SMRZ_0002246801
Schistosoma margrebowiei
SMRZ_0002246801
N
0.867
Smp_098780
Schistosoma mansoni
Smp_098780
N
0.867
A_01907
Schistosoma haematobium
A_01907
N
0.867
EmuJ_000217500
Echinococcus multilocularis
EmuJ_000217500
N
0.827
MCOS_0000774901
Mesocestoides corti
MCOS_0000774901
N
0.827
HDID_0000136701
Hymenolepis diminuta
HDID_0000136701
N
0.827
TTAC_0000041401
Hydatigera taeniaeformis
TTAC_0000041401
N
0.827
TsM_001176500
Taenia solium
TsM_001176500
N
0.827
TASK_0000624801
Taenia asiatica
TASK_0000624801
N
0.827
HmN_000727400
Hymenolepis microstoma
HmN_000727400
N
0.826
CRE31308
Caenorhabditis remanei
CRE31308
N
0.754
CRE08474
Caenorhabditis remanei
CRE08474
N
0.738
ENSCSAVG00000011291
Ciona savignyi
ENSCSAVG00000011291
I
0.699
foxa-a
Ciona intestinalis
ENSCING00000022098
I
0.698
ENSCSAVG00000004649
Ciona savignyi
ENSCSAVG00000004649
I
0.698
ENSAMXG00000008595
Astyanax mexicanus
ENSAMXG00000008595
I
0.685
foxa2
Danio rerio
ENSDARG00000003411
I
0.684
ENSGMOG00000017852
Gadus morhua
ENSGMOG00000017852
I
0.683
Ocbimv22006019m.g
Octopus bimaculoides
Ocbimv22006019m.g
I
0.681
ENSONIG00000008136
Oreochromis niloticus
ENSONIG00000008136
I
0.681
foxa2
Takifugu rubripes
ENSTRUG00000008187
I
0.681
foxa2
Tetraodon nigroviridis
ENSTNIG00000016890
I
0.681
ENSLACG00000008212
Latimeria chalumnae
ENSLACG00000008212
I
0.680
foxa2
Oryzias latipes
ENSORLG00000017407
I
0.680
foxa2
Gasterosteus aculeatus
ENSGACG00000006986
I
0.680
ENSPFOG00000003245
Poecilia formosa
ENSPFOG00000003245
I
0.680
ENSGMOG00000018910
Gadus morhua
ENSGMOG00000018910
I
0.680
ENSXMAG00000016270
Xiphophorus maculatus
ENSXMAG00000016270
I
0.680
tetur14g02480
Tetranychus urticae
tetur14g02480
I
0.668
Q2L6N7_PELSI
Trionyx sinensis
Q2L6N7_PELSI
D
0.667
HMEL017967
Heliconius melpomene
HMEL017967
I
0.666
L798_14202
Zootermopsis nevadensis
L798_14202
I
0.666
KGM_03634
Danaus plexippus
KGM_03634
I
0.666
BGIBMGA005101
Bombyx mori
BGIBMGA005101
I
0.666
ENSLACG00000012599
Latimeria chalumnae
ENSLACG00000012599
I
0.666
CLEC001132
Cimex lectularius
CLEC001132
I
0.666
foxa1.S
Xenopus laevis
XB-GENE-6256649
I
0.666
ENSCING00000023488
Ciona intestinalis
ENSCING00000023488
I
0.666
Hsal_05933--XP_394770.3_APIME
Harpegnathos saltator
Hsal_05933--XP_394770.3_APIME
I
0.666
HHAL004914-PA
Halyomorpha halys
HHAL004914-PA
I
0.666
FOXA1
Tursiops truncatus
ENSTTRG00000002855
I
0.665
ENSP00000315955-D2
Bos grunniens
ENSP00000315955-D2
I
0.665
foxa1
Takifugu rubripes
ENSTRUG00000006136
I
0.665
Cmyd_10014568
Chelonia mydas
Cmyd_10014568
I
0.665
ENSVPAG00000009933
Vicugna pacos
ENSVPAG00000009933
I
0.665
foxa1
Tetraodon nigroviridis
ENSTNIG00000002587
I
0.665
Gfo_R012942
Geospiza fortis
Gfo_R012942
I
0.665
Aan_R005715
Calypte anna
Aan_R005715
I
0.665
foxa1
Xenopus tropicalis
XB-GENE-487352
I
0.665
ENSXMAG00000018285
Xiphophorus maculatus
ENSXMAG00000018285
I
0.665
Ogr19511
Ophisaurus gracilis
Ogr19511
I
0.665
ENSPFOG00000009082
Poecilia formosa
ENSPFOG00000009082
I
0.665
foxa1
Gasterosteus aculeatus
ENSGACG00000004306
I
0.665
FOXA1
Homo sapiens
ENSG00000129514
D
0.665
FOXA1
Felis catus
ENSFCAG00000028305
I
0.665
FOXA1
Gorilla gorilla
ENSGGOG00000022617
I
0.665
FOXA1
Loxodonta africana
ENSLAFG00000000062
I
0.665
ENSMEUG00000000643
Macropus eugenii
ENSMEUG00000000643
I
0.665
ENSLOCG00000009382
Lepisosteus oculatus
ENSLOCG00000009382
I
0.665
FOXA2
Loxodonta africana
ENSLAFG00000026345
I
0.665
ENSFALG00000006161
Ficedula albicollis
ENSFALG00000006161
I
0.665
FOXA1
Dasypus novemcinctus
ENSDNOG00000032245
I
0.665
ENSAMXG00000000305
Astyanax mexicanus
ENSAMXG00000000305
I
0.665
ENSAMEG00000008009
Ailuropoda melanoleuca
ENSAMEG00000008009
I
0.665
FOXA1
Anolis carolinensis
ENSACAG00000001256
I
0.665
FOXA1
Bos taurus
ENSBTAG00000013888
I
0.665
FOXA1
Canis familiaris
ENSCAFG00000013743
I
0.665
foxa1
Danio rerio
ENSDARG00000102138
I
0.665
ENSCSAG00000015444
Chlorocebus sabaeus
ENSCSAG00000015444
I
0.665
ENSCPOG00000026606
Cavia porcellus
ENSCPOG00000026606
I
0.665
ENSMICG00000003135
Microcebus murinus
ENSMICG00000003135
I
0.665
FOXA1
Myotis lucifugus
ENSMLUG00000029779
I
0.665
FOXA1
Pan troglodytes
ENSPTRG00000006285
I
0.665
ENSPSIG00000011490
Pelodiscus sinensis
ENSPSIG00000011490
I
0.665
ENSPPYG00000005758
Pongo abelii
ENSPPYG00000005758
I
0.665
FOXA1
Pteropus vampyrus
ENSPVAG00000014588
I
0.665
Foxa1
Rattus norvegicus
ENSRNOG00000009284
I
0.665
ENSSSCG00000001940
Sus scrofa
ENSSSCG00000001940
I
0.665
ENSSHAG00000001593
Sarcophilus harrisii
ENSSHAG00000001593
I
0.665
FOXA1
Sorex araneus
ENSSARG00000008208
I
0.665
ENSPANG00000015153
Papio anubis
ENSPANG00000015153
I
0.665
foxa1
Oryzias latipes
ENSORLG00000019506
I
0.665
ENSMPUG00000016255
Mustela putorius furo
ENSMPUG00000016255
I
0.665
ENSMODG00000012030
Monodelphis domestica
ENSMODG00000012030
I
0.665
FOXA1
Macaca mulatta
ENSMMUG00000009653
I
0.665
Foxa1
Mus musculus
ENSMUSG00000035451
D
0.665
ENSOARG00000008192
Ovis aries
ENSOARG00000008192
I
0.665
ENSONIG00000011782
Oreochromis niloticus
ENSONIG00000011782
I
0.665
FOXA1
Otolemur garnettii
ENSOGAG00000031319
I
0.665
ENSSTOG00000023537
Ictidomys tridecemlineatus
ENSSTOG00000023537
I
0.665