CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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T265_08863
(
Opisthorchis viverrini
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00250 (Forkhead)
IPR001766
T265_08863
T191209_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q2L6N7_PELSI
M01990_2.00
Trionyx sinensis
KTRTTTACA
TGTAAAYAM
PBM
Weirauch et al.(2014)
pTH5334
0.667
0.616
FOXA1
M04817_2.00
Homo sapiens
NTRTKTACMYWN
NWRKGTAMAYAN
SELEX
Yin et al.(2017)
FOXA1_eDBD_HT-SELEX
0.666
0.651
FOXA1
M04819_2.00
Homo sapiens
BVYTAWGTAAACAAWN
NWTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_1
0.666
0.651
FOXA1
M04820_2.00
Homo sapiens
HWRWRYAAATATTKACWYWR
YWRWGTMAATATTTRYWYWD
SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_2
0.666
0.651
FOXA1
M08117_2.00
Homo sapiens
NNNNTRTTTACWYWD
HWRWGTAAAYANNNN
ChIP-seq
Mathelier et al.(2014)
MA0148.3
0.666
0.651
FOXA1
M07960_2.00
Homo sapiens
NNYWRWGYAAACANN
NNTGTTTRCWYWRNN
ChIP-seq
Gerstein et al.(2012)
ECC-1_FOXA1_HudsonAlpha
0.666
0.651
FOXA1
M07961_2.00
Homo sapiens
HWRWGTAAAYA
TRTTTACWYWD
ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA1_HudsonAlpha
0.666
0.651
FOXA1
M07962_2.00
Homo sapiens
NWVWGTAAACA
TGTTTACWBWN
ChIP-seq
Gerstein et al.(2012)
T-47D_FOXA1_HudsonAlpha
0.666
0.651
FOXA1
M08199_2.00
Homo sapiens
BWRDGTAAACANN
NNTGTTTACHYWV
ChIP-seq
Contrino et al.(2012)
Mv69
0.666
0.651
FOXA1
M08028_2.00
Homo sapiens
WRWRYAAAYA
TRTTTRYWYW
ChIP-seq
Chen et al.(2011)
GSE15244_FoxA1
0.666
0.651
FOXA1
M09090_2.00
Homo sapiens
VHWRWGTAAACA
TGTTTACWYWDB
Misc
Kulakovskiy et al.(2013)
FOXA1_HUMAN.H11MO.0.A
0.666
0.651
Foxa1
M09103_2.00
Mus musculus
TRTTKACWYW
WRWGTMAAYA
Misc
Kulakovskiy et al.(2013)
FOXA1_MOUSE.H11MO.0.A
0.666
0.651
FOXA1
M09544_2.00
Homo sapiens
WGCCAARRYAAAYANN
NNTRTTTRYYTTGGCW
Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_2
0.666
0.651
FOXA1
M09543_2.00
Homo sapiens
WRWGTAAACA
TGTTTACWYW
Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_1
0.666
0.651
FOXA1
M09545_2.00
Homo sapiens
WRWGTAAAYA
TRTTTACWYW
Misc
Heinz et al.(2010)
MCF7-FOXA1_GSE26831
0.666
0.651
FOXA1
M10542_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXA1_02
0.666
0.651
FOXA1
M10543_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$FOXA1_03
0.666
0.651
FOXA1
M10544_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3A_01
0.666
0.651
FOXA1
M10545_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3ALPHA_Q6
0.666
0.651
FOXA1
M10546_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF3A_Q6
0.666
0.651
FOXA1
M04818_2.00
Homo sapiens
NWRDGYMAAYAW
WTRTTKRCHYWN
SELEX
Yin et al.(2017)
FOXA1_eDBD_Methyl-HT-SELEX
0.666
0.651
FOXA1
M04821_2.00
Homo sapiens
BVYTAWGTAAACAAWV
BWTTGTTTACWTARBV
SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_1
0.666
0.651
FOXA1
M04822_2.00
Homo sapiens
YTRWRYAAATATTTACWYAR
YTRWGTAAATATTTRYWYAR
SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_2
0.666
0.651
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
T265_08863
Forkhead
326
415
KPPFSYITLIVSAMSSKPSKQITLSEIYAWIMSTFAYYRKNTRRWQNSIRHALSFNDCFIKVPRPSGEAGKGSYWTVHPRAVDMFENGSS
Links
Other
Forkhead
family TFs
Other
Opisthorchis viverrini
TFs
95 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy