CpipJ_CPIJ008349 (Culex pipiens)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 CpipJ_CPIJ008349 T191429_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gata6
M00165_2.00
Mus musculus
NHGATARN

NYTATCDN
PBM
Badis et al.(2009)
Gata6_3769
0.802 0.765
GATA6
M04877_2.00
Homo sapiens
HGATAABVATCD

HGATBVTTATCD
SELEX
Yin et al.(2017)
GATA6_eDBD_HT-SELEX
0.802 0.765
GATA6
M08124_2.00
Homo sapiens
NNNAGATAAGRNN

NNYCTTATCTNNN
ChIP-seq
Mathelier et al.(2014)
MA1104.1
0.802 0.765
GATA6
M09118_2.00
Homo sapiens
NVWGATAAGRNNN

NNNYCTTATCWBN
Misc
Kulakovskiy et al.(2013)
GATA6_HUMAN.H11MO.0.A
0.802 0.765
Gata6
M09120_2.00
Mus musculus
NVWGATAAGV

BCTTATCWBN
Misc
Kulakovskiy et al.(2013)
GATA6_MOUSE.H11MO.0.A
0.802 0.765
GATA6
M10592_2.00
Homo sapiens
NNHGATWDNN

NNHWATCDNN
Transfac
Matys et al.(2006)
V$GATA6_01
0.802 0.765
GATA6
M10593_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA6_Q5
0.802 0.765
GATA6
M04878_2.00
Homo sapiens
HGATAABRATCW

WGATYVTTATCD
SELEX
Yin et al.(2017)
GATA6_eDBD_Methyl-HT-SELEX
0.802 0.765
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ008349-RA GATA 451 483
CpipJ_CPIJ008349-RA GATA 513 547

Links

Other GATA family TFs
Other Culex pipiens TFs

Invalid Input OrderBy

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action