CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VDBG_00739
(
Verticillium albo atrum
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
VDBG_00739
T191526_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sre
M01237_2.00
Neurospora crassa
NHGATHWN
NWDATCDN
PBM
Lambert et al.(2019)
pTH11832
0.854
0.913
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDBG_00739T0
GATA
123
156
CSNCGTTQTPLWRRSPQGTTICNACGLYQKARNA
VDBG_00739T0
GATA
286
320
CQNCGTTTTPLWRRDESGHTICNACGLYYKLHGVH
Links
Other
GATA
family TFs
Other
Verticillium albo atrum
TFs
135 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy