GATA28 (Arabidopsis thaliana)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 AT1G51600 T191707_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA28
M01996_2.00		 Arabidopsis thaliana
NNGATNN
NNATCNN		 PBM
Weirauch et al.(2014)
pTH7505		 (Direct) (Direct)
GATA28
M06883_2.00		 Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
ZML2_col_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS06G0698900
M02015_2.00 		Oryza sativa
NNNNAHBNN
NNVDTNNNN		 PBM
Weirauch et al.(2014)
pTH8641 		0.851 0.857
GATA24
M01941_2.00 		Arabidopsis thaliana
HGATBNN
NNVATCD		 PBM
Weirauch et al.(2014)
pTH7661 		0.847 0.886
ZIM
M06892_2.00 		Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT		 Dap-seq
OMalley et al.(2016)
ZIM_col_a 		0.810 0.800
For this family, TFs with SR scores > 0.802 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01996_2.00 GATA 51 87

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G51600.1 GATA 223 259
AT1G51600.2 GATA 223 259

Links

Other GATA family TFs
Other Arabidopsis thaliana TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I 0.867
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I 0.867
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I 0.867
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I 0.867
ZML2 Arabidopsis lyrata scaffold_104929.1 I 0.867
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I 0.862
Bo3g181450 Brassica oleracea Bo3g181450 I 0.856
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I 0.856
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I 0.856
Bra014292 Brassica rapa Bra014292 I 0.855
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I 0.851
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I 0.851
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I 0.851
GATA17 Oryza sativa OS02G0148500 I 0.851
OPUNC06G23830 Oryza punctata OPUNC06G23830 I 0.851
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I 0.851
ONIVA06G28780 Oryza nivara ONIVA06G28780 I 0.851
OMERI02G04610 Oryza meridionalis OMERI02G04610 I 0.851
OLONG_015069 Oryza longistaminata OLONG_015069 I 0.851
ONIVA02G03810 Oryza nivara ONIVA02G03810 I 0.851
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I 0.851
OS06G0698900 Oryza sativa OS06G0698900 D 0.851
Cucsa.359570 Cucumis sativus Cucsa.359570 I 0.851
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I 0.851
BGIOSGA007539 Oryza indica BGIOSGA007539 I 0.851
TCM_027858 Theobroma cacao TCM_027858 I 0.851
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I 0.851
Ca_17522 Cicer arietinum Ca_17522 I 0.851
Pm013048 Prunus mume Pm013048 I 0.851
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I 0.851
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I 0.851
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I 0.851
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I 0.851
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I 0.851
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I 0.851
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I 0.851
OPUNC02G02970 Oryza punctata OPUNC02G02970 I 0.851
GRMZM2G080509 Zea mays GRMZM2G080509 I 0.851
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I 0.851
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I 0.851
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I 0.851
OBART06G26250 Oryza barthii OBART06G26250 I 0.851
GLYMA08G23720 Glycine max GLYMA08G23720 I 0.851
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I 0.851
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I 0.851
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I 0.851
LPERR02G03330 Leersia perrieri LPERR02G03330 I 0.851
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I 0.851
OB02G13220 Oryza brachyantha OB02G13220 I 0.851
OB06G33840 Oryza brachyantha OB06G33840 I 0.851
OBART02G03780 Oryza barthii OBART02G03780 I 0.851
LPERR06G21800 Leersia perrieri LPERR06G21800 I 0.851
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I 0.851
Carubv10009866m.g Capsella rubella Carubv10009866m.g I 0.851
Cla015736 Citrullus lanatus Cla015736 I 0.850
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I 0.850
OMERI06G26410 Oryza meridionalis OMERI06G26410 I 0.850
BGIOSGA020596 Oryza indica BGIOSGA020596 I 0.850
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I 0.848
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I 0.848
Pm022163 Prunus mume Pm022163 I 0.848
29838.m001724 Ricinus communis 29838.m001724 I 0.848
Bra031258 Brassica rapa Bra031258 I 0.847
TRIUR3_11107 Triticum urartu TRIUR3_11107 I 0.847
Bo5g103560 Brassica oleracea Bo5g103560 I 0.847
Bo1g108240 Brassica oleracea Bo1g108240 I 0.847
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I 0.847
Bra023900 Brassica rapa Bra023900 I 0.847
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I 0.847
GRMZM2G058479 Zea mays GRMZM2G058479 I 0.847
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I 0.847
MLOC_17061 Hordeum vulgare MLOC_17061 I 0.847
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I 0.847
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I 0.847
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I 0.847
Carubv10016131m.g Capsella rubella Carubv10016131m.g I 0.847
Sb10g028750 Sorghum bicolor Sb10g028750 I 0.847
Si006750m.g Setaria italica Si006750m.g I 0.847
GATA24 Arabidopsis thaliana AT3G21175 D 0.847
Cucsa.218190 Cucumis sativus Cucsa.218190 I 0.843
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I 0.843
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I 0.843
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I 0.843
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I 0.842
Cla013127 Citrullus lanatus Cla013127 I 0.842
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I 0.837
F775_08559 Aegilops tauschii F775_08559 I 0.837
MLOC_3107 Hordeum vulgare MLOC_3107 I 0.837
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I 0.837
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I 0.837
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I 0.837
TCM_007360 Theobroma cacao TCM_007360 I 0.837
TRIUR3_32095 Triticum urartu TRIUR3_32095 I 0.837
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I 0.837
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I 0.837
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I 0.837
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I 0.837
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I 0.837
LPERR11G14110 Leersia perrieri LPERR11G14110 I 0.836
mgf016112m Mimulus guttatus mgf016112m I 0.832
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I 0.819
MTR_4g008070 Medicago truncatula MTR_4g008070 I 0.819
BRADI3G03800 Brachypodium distachyon BRADI3G03800 I 0.818
PK11000.1 Cannabis sativa PK11000.1 I 0.812
SELMODRAFT_409922 Selaginella moellendorffii SELMODRAFT_409922 I 0.812
SELMODRAFT_442360 Selaginella moellendorffii SELMODRAFT_442360 I 0.812
Bo1g039000 Brassica oleracea Bo1g039000 I 0.810
MTR_3g100050 Medicago truncatula MTR_3g100050 I 0.810
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I 0.810
Bra013805 Brassica rapa Bra013805 I 0.810
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I 0.810
Carubv10006355m.g Capsella rubella Carubv10006355m.g I 0.810
ZIM Arabidopsis thaliana AT4G24470 D 0.810
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I 0.810
Bostr.7867s0254 Boechera stricta Bostr.7867s0254 I 0.810
Ca_01471 Cicer arietinum Ca_01471 I 0.806