GATA15 (Arabidopsis thaliana)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 AT3G06740 T191711_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the GATA factor family of zinc finger transcription factors.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA15
M01997_2.00		 Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662		 (Direct) (Direct)
GATA15
M06886_2.00		 Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.825 0.917
For this family, TFs with SR scores > 0.802 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01997_2.00 GATA 43 78

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G06740.1 GATA 43 78

Links

Other GATA family TFs
Other Arabidopsis thaliana TFs

Invalid Input OrderBy

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action