Bo2g132210 (Brassica oleracea)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bo2g132210 T191879_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA27
M02005_2.00
Arabidopsis thaliana
NNGATBNNN

NNNVATCNN
PBM
Weirauch et al.(2014)
pTH7492
0.867 1.000
GATA26
M02001_2.00
Arabidopsis thaliana
NNKATBNNNN

NNNNVATMNN
PBM
Weirauch et al.(2014)
pTH7490
0.867 0.944
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g132210.1 GATA 31 66

Links

Other GATA family TFs
Other Brassica oleracea TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.30275s0218 Boechera stricta Bostr.30275s0218 I 0.867
Bostr.28243s0001 Boechera stricta Bostr.28243s0001 I 0.867
Cagra.3356s0048 Capsella grandiflora Cagra.3356s0048 I 0.867
Cagra.3675s0017 Capsella grandiflora Cagra.3675s0017 I 0.867
Carubv10026597m.g Capsella rubella Carubv10026597m.g I 0.867
Carubv10007115m.g Capsella rubella Carubv10007115m.g I 0.867
Aquca_053_00062 Aquilegia coerulea Aquca_053_00062 I 0.867
mgf024972m Mimulus guttatus mgf024972m I 0.867
27940.m000323 Ricinus communis 27940.m000323 I 0.867
Traes_2DL_C46B73FA3 Triticum aestivum Traes_2DL_C46B73FA3 I 0.867
cassava42719.valid.m1 Manihot esculenta cassava42719.valid.m1 I 0.867
mgf015364m Mimulus guttatus mgf015364m I 0.867
mgf016271m Mimulus guttatus mgf016271m I 0.867
Ciclev10019614m.g Citrus clementina Ciclev10019614m.g I 0.867
Eucgr.D02129 Eucalyptus grandis Eucgr.D02129 I 0.867
SapurV1A.0107s0250 Salix purpurea SapurV1A.0107s0250 I 0.867
orange1.1g009155m.g Citrus sinensis orange1.1g009155m.g I 0.867
SapurV1A.0201s0160 Salix purpurea SapurV1A.0201s0160 I 0.867
Thhalv10000871m.g Eutrema salsugineum Thhalv10000871m.g I 0.867
PK11095.1 Cannabis sativa PK11095.1 I 0.867
Thhalv10024940m.g Eutrema salsugineum Thhalv10024940m.g I 0.867
Lus10011010.g Linum usitatissimum Lus10011010.g I 0.867
Lus10011008.g Linum usitatissimum Lus10011008.g I 0.867
Gorai.003G177500 Gossypium raimondii Gorai.003G177500 I 0.867
Eucgr.E00364 Eucalyptus grandis Eucgr.E00364 I 0.867
Gorai.004G193200 Gossypium raimondii Gorai.004G193200 I 0.867
Gorai.006G214400 Gossypium raimondii Gorai.006G214400 I 0.867
Gorai.008G231500 Gossypium raimondii Gorai.008G231500 I 0.867
TCM_015870 Theobroma cacao TCM_015870 I 0.867
Ca_02313 Cicer arietinum Ca_02313 I 0.867
Bra040167 Brassica rapa Bra040167 I 0.867
Bra024961 Brassica rapa Bra024961 I 0.867
Bra022107 Brassica rapa Bra022107 I 0.867
GATA27 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8000066 I 0.867
POPTR_0003s08080 Populus trichocarpa POPTR_0003s08080 I 0.867
GLYMA05G05320 Glycine max GLYMA05G05320 I 0.867
GLYMA01G41370 Glycine max GLYMA01G41370 I 0.867
Bra021041 Brassica rapa Bra021041 I 0.867
Bra017501 Brassica rapa Bra017501 I 0.867
GATA27 Arabidopsis thaliana AT5G47140 D 0.867
GATA26 Arabidopsis thaliana AT4G17570 D 0.867
Bo1g017650 Brassica oleracea Bo1g017650 I 0.867
Bo7g077300 Brassica oleracea Bo7g077300 I 0.867
Bo9g069320 Brassica oleracea Bo9g069320 I 0.867
Bo8g049560 Brassica oleracea Bo8g049560 I 0.867
GLYMA11G04060 Glycine max GLYMA11G04060 I 0.867
GATA26 Arabidopsis lyrata fgenesh2_kg.7__2553__AT4G17570.1 I 0.867
GSMUA_Achr8G15000_001 Musa acuminata GSMUA_Achr8G15000_001 I 0.867
GSMUA_Achr2G18310_001 Musa acuminata GSMUA_Achr2G18310_001 I 0.867
GLYMA17G15610 Glycine max GLYMA17G15610 I 0.867
POPTR_0001s15170 Populus trichocarpa POPTR_0001s15170 I 0.867
GSMUA_Achr11G17690_001 Musa acuminata GSMUA_Achr11G17690_001 I 0.867
GSMUA_Achr5G18290_001 Musa acuminata GSMUA_Achr5G18290_001 I 0.867
Aquca_082_00024 Aquilegia coerulea Aquca_082_00024 I 0.862
estExt_fgenesh1_pg.C_1220019 Physcomitrella patens estExt_fgenesh1_pg.C_1220019 I 0.857
estExt_fgenesh1_pg.C_4100005 Physcomitrella patens estExt_fgenesh1_pg.C_4100005 I 0.857
Traes_2BL_4575D095D Triticum aestivum Traes_2BL_4575D095D I 0.856
Traes_2AL_01E6C08C0 Triticum aestivum Traes_2AL_01E6C08C0 I 0.856
GSMUA_Achr11G23110_001 Musa acuminata GSMUA_Achr11G23110_001 I 0.856
MLOC_15510 Hordeum vulgare MLOC_15510 I 0.856
BRADI5G17370 Brachypodium distachyon BRADI5G17370 I 0.856
Bra017500 Brassica rapa Bra017500 I 0.831
PGSC0003DMG400023781 Solanum tuberosum PGSC0003DMG400023781 I 0.831
Lus10000587.g Linum usitatissimum Lus10000587.g I 0.827
F775_19309 Aegilops tauschii F775_19309 I 0.827
LjSGA_060304.1 Lotus japonicus LjSGA_060304.1 I 0.827
evm.TU.supercontig_74.95 Carica papaya evm.TU.supercontig_74.95 I 0.827
AMTR_s00008p00092930 Amborella trichopoda AMTR_s00008p00092930 I 0.816
MDP0000129092 Malus domestica MDP0000129092 I 0.816