Bo5g123610 (Brassica oleracea)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bo5g123610 T191896_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG

CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.822 0.750
GATA15
M01997_2.00
Arabidopsis thaliana
NNHGATCNN

NNGATCDNN
PBM
Weirauch et al.(2014)
pTH7662
0.802 0.750
GATA15
M06886_2.00
Arabidopsis thaliana
GATGATGATGATGATGATS

SATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
GATA15_col_b
0.802 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g123610.1 GATA 43 78

Links

Other GATA family TFs
Other Brassica oleracea TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GATA15 Arabidopsis thaliana AT3G06740 D 0.802
GATA16 Arabidopsis thaliana AT5G49300 D 0.822
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.861
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.861
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.802
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.861
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.861
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.861
Carubv10014841m.g Capsella rubella Carubv10014841m.g I 0.802
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.833
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.833
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.846
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.806
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.846
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.861
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.802
Pm003128 Prunus mume Pm003128 I 0.806
Pm008287 Prunus mume Pm008287 I 0.846
29889.m003248 Ricinus communis 29889.m003248 I 0.846
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.833
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.833
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.846
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.846
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.846
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.846
mgf003937m Mimulus guttatus mgf003937m I 0.846
mgf022078m Mimulus guttatus mgf022078m I 0.836
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.833
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.846
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.833
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.806
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.833
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.833
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.846
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.846
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.833
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.861
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.802
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.861
PK18820.1 Cannabis sativa PK18820.1 I 0.846
PK21934.1 Cannabis sativa PK21934.1 I 0.819
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.846
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.833
MDP0000309902 Malus domestica MDP0000309902 I 0.814
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.833
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.846
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.846
Gorai.002G029400 Gossypium raimondii Gorai.002G029400 I 0.830
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.846
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.833
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.833
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.833
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.846
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.814
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.846
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.846
GATA17 Arabidopsis thaliana AT3G16870 I 0.861
Bra037421 Brassica rapa Bra037421 I 0.802
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.822
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.861
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.861
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.802
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.846
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.846
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.822
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.846
OBART03G39750 Oryza barthii OBART03G39750 I 0.822
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.822
Bra033533 Brassica rapa Bra033533 I 0.861
Bra022184 Brassica rapa Bra022184 I 0.865
Bra021209 Brassica rapa Bra021209 I 0.865
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.861
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.822
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.822
Bo00847s050 Brassica oleracea Bo00847s050 I 0.833
Bo1g055120 Brassica oleracea Bo1g055120 I 0.861
Bo1g122970 Brassica oleracea Bo1g122970 I 0.865
Bo3g068560 Brassica oleracea Bo3g068560 I 0.861
Bo7g092660 Brassica oleracea Bo7g092660 I 0.802
Bo7g104200 Brassica oleracea Bo7g104200 I 0.861
Bra012742 Brassica rapa Bra012742 I 0.861
Bra020650 Brassica rapa Bra020650 I 0.806
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.822
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.822
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.822
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.833
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.822
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.861
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.846
TCM_004753 Theobroma cacao TCM_004753 I 0.833
TCM_021303 Theobroma cacao TCM_021303 I 0.846
TCM_026732 Theobroma cacao TCM_026732 I 0.833
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.846
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.806
Ca_02992 Cicer arietinum Ca_02992 I 0.846
Cla009422 Citrullus lanatus Cla009422 I 0.846
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.806
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.846
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.846
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.822
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.822
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.822
OS03G0831200 Oryza sativa OS03G0831200 I 0.822
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.828
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.846
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.861
PGSC0003DMG400024783 Solanum tuberosum PGSC0003DMG400024783 I 0.822
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.833
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.846
Cla022104 Citrullus lanatus Cla022104 I 0.846
Gorai.013G206400 Gossypium raimondii Gorai.013G206400 N 0.810
Aquca_003_00608 Aquilegia coerulea Aquca_003_00608 N 0.821