CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bra014292
(
Brassica rapa
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
Bra014292
T191957_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA28
M01996_2.00
Arabidopsis thaliana
NNGATNN
NNATCNN
PBM
Weirauch et al.(2014)
pTH7505
0.855
0.914
GATA28
M06883_2.00
Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
ZML2_col_a
0.855
0.914
OS06G0698900
M02015_2.00
Oryza sativa
NNNNAHBNN
NNVDTNNNN
PBM
Weirauch et al.(2014)
pTH8641
0.850
0.829
GATA24
M01941_2.00
Arabidopsis thaliana
HGATBNN
NNVATCD
PBM
Weirauch et al.(2014)
pTH7661
0.845
0.857
ZIM
M06892_2.00
Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT
Dap-seq
OMalley et al.(2016)
ZIM_col_a
0.809
0.771
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra014292.1-P
GATA
224
260
CRHCGIGEKSTPMMRRGPEGPRTLCNACGLMWANKAS
Links
Other
GATA
family TFs
Other
Brassica rapa
TFs
113 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy