CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra040288
(
Brassica rapa
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
Bra040288
T191992_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA15
M01997_2.00
Arabidopsis thaliana
NNHGATCNN
NNGATCDNN
PBM
Weirauch et al.(2014)
pTH7662
0.855
0.889
GATA15
M06886_2.00
Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
GATA15_col_b
0.855
0.889
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.824
0.833
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra040288.1-P
GATA
44
79
CAICGTSKTPLWRGGPTGPKSLCNACGIRNKKKKST
Links
Other
GATA
family TFs
Other
Brassica rapa
TFs
83 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo1g147740
Brassica oleracea
Bo1g147740
I
0.867
Thhalv10021708m.g
Eutrema salsugineum
Thhalv10021708m.g
I
0.855
GATA15
Arabidopsis lyrata
fgenesh2_kg.3__690__AT3G06740.1
I
0.855
Cagra.0133s0025
Capsella grandiflora
Cagra.0133s0025
I
0.855
GATA15
Arabidopsis thaliana
AT3G06740
D
0.855
Bostr.22252s0362
Boechera stricta
Bostr.22252s0362
I
0.855
Carubv10014841m.g
Capsella rubella
Carubv10014841m.g
I
0.855
GATA16
Arabidopsis lyrata
scaffold_801309.1
I
0.824
Bo7g092660
Brassica oleracea
Bo7g092660
I
0.824
Bostr.15774s0060
Boechera stricta
Bostr.15774s0060
I
0.824
GATA16
Arabidopsis thaliana
AT5G49300
D
0.824
Carubv10027332m.g
Capsella rubella
Carubv10027332m.g
I
0.824
Bra037421
Brassica rapa
Bra037421
I
0.824
Bo00847s050
Brassica oleracea
Bo00847s050
I
0.824
Thhalv10005103m.g
Eutrema salsugineum
Thhalv10005103m.g
I
0.824
POPTR_0010s00360
Populus trichocarpa
POPTR_0010s00360
I
0.812
LjSGA_011217.1
Lotus japonicus
LjSGA_011217.1
I
0.812
MTR_4g121110
Medicago truncatula
MTR_4g121110
I
0.812
SapurV1A.2413s0010
Salix purpurea
SapurV1A.2413s0010
I
0.812
SapurV1A.0739s0060
Salix purpurea
SapurV1A.0739s0060
I
0.812
Ca_02992
Cicer arietinum
Ca_02992
I
0.812
POPTR_0008s22950
Populus trichocarpa
POPTR_0008s22950
I
0.812
TCM_021303
Theobroma cacao
TCM_021303
I
0.810
cassava43030.valid.m1
Manihot esculenta
cassava43030.valid.m1
I
0.810
PRUPE_ppa013171mg
Prunus persica
PRUPE_ppa013171mg
I
0.810
evm.TU.supercontig_9.102
Carica papaya
evm.TU.supercontig_9.102
I
0.810
Gorai.005G065300
Gossypium raimondii
Gorai.005G065300
I
0.810
gene05175-v1.0-hybrid
Fragaria vesca
gene05175-v1.0-hybrid
I
0.810
Cucsa.252730
Cucumis sativus
Cucsa.252730
I
0.810
GSMUA_Achr2G16730_001
Musa acuminata
GSMUA_Achr2G16730_001
I
0.810
Pm008287
Prunus mume
Pm008287
I
0.810
Cla022104
Citrullus lanatus
Cla022104
I
0.810
mgf003937m
Mimulus guttatus
mgf003937m
I
0.810
Lus10016849.g
Linum usitatissimum
Lus10016849.g
I
0.810
Eucgr.A00193
Eucalyptus grandis
Eucgr.A00193
I
0.810
Lus10037721.g
Linum usitatissimum
Lus10037721.g
I
0.810
29889.m003248
Ricinus communis
29889.m003248
I
0.807
cassava37139.valid.m1
Manihot esculenta
cassava37139.valid.m1
I
0.807
orange1.1g030971m.g
Citrus sinensis
orange1.1g030971m.g
I
0.807
GLYMA17G03410
Glycine max
GLYMA17G03410
I
0.807
GLYMA07G37190
Glycine max
GLYMA07G37190
I
0.807
Ciclev10003698m.g
Citrus clementina
Ciclev10003698m.g
I
0.807
Gorai.008G142200
Gossypium raimondii
Gorai.008G142200
I
0.807
TCM_004753
Theobroma cacao
TCM_004753
I
0.807
Ciclev10006161m.g
Citrus clementina
Ciclev10006161m.g
I
0.806
Gorai.007G125000
Gossypium raimondii
Gorai.007G125000
I
0.806
Pavir.J12379
Panicum virgatum
Pavir.J12379
I
0.806
SapurV1A.0107s0060
Salix purpurea
SapurV1A.0107s0060
I
0.806
SapurV1A.0186s0560
Salix purpurea
SapurV1A.0186s0560
I
0.806
PK18820.1
Cannabis sativa
PK18820.1
I
0.806
Pavir.J03766
Panicum virgatum
Pavir.J03766
I
0.806
orange1.1g032112m.g
Citrus sinensis
orange1.1g032112m.g
I
0.806
evm.TU.supercontig_151.51
Carica papaya
evm.TU.supercontig_151.51
I
0.806
evm.TU.supercontig_48.133
Carica papaya
evm.TU.supercontig_48.133
I
0.806
Gorai.013G127900
Gossypium raimondii
Gorai.013G127900
I
0.806
Eucgr.H04023
Eucalyptus grandis
Eucgr.H04023
I
0.806
Cla009422
Citrullus lanatus
Cla009422
I
0.806
OLONG_023900
Oryza longistaminata
OLONG_023900
I
0.806
OGLUM03G39650
Oryza glumaepatula
OGLUM03G39650
I
0.806
OMERI03G36600
Oryza meridionalis
OMERI03G36600
I
0.806
ONIVA03G41600
Oryza nivara
ONIVA03G41600
I
0.806
OPUNC03G36900
Oryza punctata
OPUNC03G36900
I
0.806
OBART03G39750
Oryza barthii
OBART03G39750
I
0.806
LPERR03G33900
Leersia perrieri
LPERR03G33900
I
0.806
BGIOSGA013869
Oryza indica
BGIOSGA013869
I
0.806
BGIOSGA013867
Oryza indica
BGIOSGA013867
I
0.806
BRADI1G03020
Brachypodium distachyon
BRADI1G03020
I
0.806
F775_43556
Aegilops tauschii
F775_43556
I
0.806
GRMZM2G114775
Zea mays
GRMZM2G114775
I
0.806
OPUNC03G36910
Oryza punctata
OPUNC03G36910
I
0.806
ORUFI03G41540
Oryza rufipogon
ORUFI03G41540
I
0.806
Traes_5BL_F258582BB
Triticum aestivum
Traes_5BL_F258582BB
I
0.806
TCM_026732
Theobroma cacao
TCM_026732
I
0.806
VIT_05s0077g01450
Vitis vinifera
VIT_05s0077g01450
I
0.806
cassava15577.m1
Manihot esculenta
cassava15577.m1
I
0.806
cassava15588.m1
Manihot esculenta
cassava15588.m1
I
0.806
Solyc12g099370.1
Solanum lycopersicum
Solyc12g099370.1
I
0.806
Si037892m.g
Setaria italica
Si037892m.g
I
0.806
OS03G0831200
Oryza sativa
OS03G0831200
I
0.806
PGSC0003DMG400004624
Solanum tuberosum
PGSC0003DMG400004624
I
0.806
POPTR_0005s02040
Populus trichocarpa
POPTR_0005s02040
I
0.806
Sb01g002270
Sorghum bicolor
Sb01g002270
I
0.806
Cucsa.069460
Cucumis sativus
Cucsa.069460
I
0.806