CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CPIJ008349
(
Culex quinquefasciatus
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
CPIJ008349
T192373_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gata6
M00165_2.00
Mus musculus
NHGATARN
NYTATCDN
PBM
Badis et al.(2009)
Gata6_3769
0.802
0.765
GATA6
M04877_2.00
Homo sapiens
HGATAABVATCD
HGATBVTTATCD
SELEX
Yin et al.(2017)
GATA6_eDBD_HT-SELEX
0.802
0.765
GATA6
M08124_2.00
Homo sapiens
NNNAGATAAGRNN
NNYCTTATCTNNN
ChIP-seq
Mathelier et al.(2014)
MA1104.1
0.802
0.765
GATA6
M09118_2.00
Homo sapiens
NVWGATAAGRNNN
NNNYCTTATCWBN
Misc
Kulakovskiy et al.(2013)
GATA6_HUMAN.H11MO.0.A
0.802
0.765
Gata6
M09120_2.00
Mus musculus
NVWGATAAGV
BCTTATCWBN
Misc
Kulakovskiy et al.(2013)
GATA6_MOUSE.H11MO.0.A
0.802
0.765
GATA6
M10592_2.00
Homo sapiens
NNHGATWDNN
NNHWATCDNN
Transfac
Matys et al.(2006)
V$GATA6_01
0.802
0.765
GATA6
M10593_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA6_Q5
0.802
0.765
GATA6
M04878_2.00
Homo sapiens
HGATAABRATCW
WGATYVTTATCD
SELEX
Yin et al.(2017)
GATA6_eDBD_Methyl-HT-SELEX
0.802
0.765
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPIJ008349-PA
GATA
451
483
CVNCGSSDTPLWRRDNVGHTLCNACALYNRQNP
CPIJ008349-PA
GATA
513
547
CANCQTTTTTLWRRNNRGEPVCNACGLYHKLHNVD
Links
Other
GATA
family TFs
Other
Culex quinquefasciatus
TFs
77 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy