TRPS1 (Vicugna pacos)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 ENSVPAG00000002166 T193137_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATAe
M03761_2.00
Drosophila melanogaster
VHGATAAS

STTATCDB
SELEX
Nitta et al.(2015)
GATAe_1
0.822 0.629
GATAe
M03762_2.00
Drosophila melanogaster
HGATAACNNNGTTATCD

HGATAACNNNGTTATCD
SELEX
Nitta et al.(2015)
GATAe_2
0.822 0.629
GATAe
M03763_2.00
Drosophila melanogaster
HGATAAGNNNCTTATCD

HGATAAGNNNCTTATCD
SELEX
Nitta et al.(2015)
GATAe_3
0.822 0.629
GATAe
M06208_2.00
Drosophila melanogaster
WGATAAG

CTTATCW
B1H
Zhu et al.(2011)
GATAe_SANGER_5_FBgn0038391
0.822 0.629
nit-2
M02017_2.00
Neurospora crassa
NNGATHNN

NNDATCNN
PBM
Weirauch et al.(2014)
pTH8624
0.808 0.543
nit-2
M10601_2.00
Neurospora crassa
DHGATA

TATCDH
Transfac
Matys et al.(2006)
F$NIT2_01
0.808 0.543
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000002002 GATA 891 925

Links

Other GATA family TFs
Other Vicugna pacos TFs

436 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00025p00072580 Amborella trichopoda AMTR_s00025p00072580 I 0.000
Aquca_043_00021 Aquilegia coerulea Aquca_043_00021 I 0.000
scaffold_401930.1 Arabidopsis lyrata scaffold_401930.1 I 0.000
ASR3 Arabidopsis thaliana AT2G33550 D 0.000
Bo4g043600 Brassica oleracea Bo4g043600 I 0.000
Bo4g182020 Brassica oleracea Bo4g182020 I 0.000
Bra005486 Brassica rapa Bra005486 I 0.000
Bra021860 Brassica rapa Bra021860 I 0.000
PK25885.1 Cannabis sativa PK25885.1 I 0.000
Carubv10023675m.g Capsella rubella Carubv10023675m.g I 0.000
evm.TU.supercontig_2461.1 Carica papaya evm.TU.supercontig_2461.1 I 0.000
Cla001502 Citrullus lanatus Cla001502 I 0.000
Ciclev10005329m.g Citrus clementina Ciclev10005329m.g I 0.000
Ciclev10033491m.g Citrus clementina Ciclev10033491m.g I 0.000
orange1.1g019057m.g Citrus sinensis orange1.1g019057m.g I 0.000
orange1.1g038571m.g Citrus sinensis orange1.1g038571m.g I 0.000
Cucsa.349220 Cucumis sativus Cucsa.349220 I 0.000
Eucgr.B03553 Eucalyptus grandis Eucgr.B03553 I 0.000
Thhalv10016974m.g Eutrema salsugineum Thhalv10016974m.g I 0.000
GLYMA18G51790 Glycine max GLYMA18G51790 I 0.000
GLYMA08G28880 Glycine max GLYMA08G28880 I 0.000
Gorai.002G021600 Gossypium raimondii Gorai.002G021600 I 0.000
chr1.LjT14I13.140.nd Lotus japonicus chr1.LjT14I13.140.nd I 0.000
MDP0000232058 Malus domestica MDP0000232058 I 0.000
cassava13649.valid.m1 Manihot esculenta cassava13649.valid.m1 I 0.000
cassava12909.valid.m1 Manihot esculenta cassava12909.valid.m1 I 0.000
cassava40545.m1 Manihot esculenta cassava40545.m1 I 0.000
mgf009760m Mimulus guttatus mgf009760m I 0.000
POPTR_0001s13060 Populus trichocarpa POPTR_0001s13060 I 0.000
POPTR_0003s16150 Populus trichocarpa POPTR_0003s16150 I 0.000
Pm024597 Prunus mume Pm024597 I 0.000
30128.m008552 Ricinus communis 30128.m008552 I 0.000
SapurV1A.0499s0110 Salix purpurea SapurV1A.0499s0110 I 0.000
SapurV1A.2674s0010 Salix purpurea SapurV1A.2674s0010 I 0.000
Si017674m.g Setaria italica Si017674m.g I 0.000
Solyc04g045430.2 Solanum lycopersicum Solyc04g045430.2 I 0.000
VIT_01s0150g00050 Vitis vinifera VIT_01s0150g00050 I 0.000
VIT_17s0000g00270 Vitis vinifera VIT_17s0000g00270 I 0.000