MTR_4g121110 (Medicago truncatula)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 MTR_4g121110 T194205_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG

CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.841 0.889
GATA15
M01997_2.00
Arabidopsis thaliana
NNHGATCNN

NNGATCDNN
PBM
Weirauch et al.(2014)
pTH7662
0.821 0.889
GATA15
M06886_2.00
Arabidopsis thaliana
GATGATGATGATGATGATS

SATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
GATA15_col_b
0.821 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH32333 GATA 32 67

Links

Other GATA family TFs
Other Medicago truncatula TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29889.m003248 Ricinus communis 29889.m003248 I 0.862
30128.m008883 Ricinus communis 30128.m008883 N 0.808
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N 0.807
Aquca_003_00608 Aquilegia coerulea Aquca_003_00608 N 0.806
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.851
BGIOSGA000005 Oryza indica BGIOSGA000005 I 0.810
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.836
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.836
Bo00847s050 Brassica oleracea Bo00847s050 I 0.852
Bo1g055120 Brassica oleracea Bo1g055120 I 0.846
Bo1g122970 Brassica oleracea Bo1g122970 I 0.846
Bo1g147740 Brassica oleracea Bo1g147740 I 0.812
Bo3g068560 Brassica oleracea Bo3g068560 I 0.846
Bo5g123610 Brassica oleracea Bo5g123610 I 0.846
Bo7g092660 Brassica oleracea Bo7g092660 I 0.821
Bo7g104200 Brassica oleracea Bo7g104200 I 0.846
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.852
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.821
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.846
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.851
Bra012742 Brassica rapa Bra012742 I 0.851
Bra020650 Brassica rapa Bra020650 I 0.825
Bra021209 Brassica rapa Bra021209 I 0.846
Bra022184 Brassica rapa Bra022184 I 0.846
Bra033533 Brassica rapa Bra033533 I 0.846
Bra037421 Brassica rapa Bra037421 I 0.821
Bra040288 Brassica rapa Bra040288 I 0.812
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.836
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I 0.810
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.851
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.821
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.846
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.851
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.846
Carubv10014841m.g Capsella rubella Carubv10014841m.g I 0.821
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.852
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.847
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.847
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.862
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.865
Ca_02992 Cicer arietinum Ca_02992 I 0.867
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.848
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.861
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.822
Cla009422 Citrullus lanatus Cla009422 I 0.861
Cla022104 Citrullus lanatus Cla022104 I 0.865
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.861
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.865
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.865
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.861
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.847
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.847
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.865
F775_43556 Aegilops tauschii F775_43556 I 0.806
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.851
GATA15 Arabidopsis thaliana AT3G06740 D 0.821
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.821
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.852
GATA16 Arabidopsis thaliana AT5G49300 D 0.841
GATA17 Arabidopsis thaliana AT3G16870 I 0.846
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.846
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.865
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.862
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.862
Gorai.002G029400 Gossypium raimondii Gorai.002G029400 I 0.820
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.865
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.847
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.848
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.847
GRMZM2G114775 Zea mays GRMZM2G114775 I 0.806
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.867
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.836
LPERR04G11580 Leersia perrieri LPERR04G11580 I 0.810
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.865
Lus10020684.g Linum usitatissimum Lus10020684.g N 0.811
Lus10029863.g Linum usitatissimum Lus10029863.g N 0.811
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.828
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.865
MDP0000309902 Malus domestica MDP0000309902 I 0.828
mgf003937m Mimulus guttatus mgf003937m I 0.865
mgf022078m Mimulus guttatus mgf022078m I 0.822
MLOC_54886 Hordeum vulgare MLOC_54886 I 0.810
OB01G55040 Oryza brachyantha OB01G55040 I 0.810
OBART01G45830 Oryza barthii OBART01G45830 I 0.810
OBART03G39750 Oryza barthii OBART03G39750 I 0.836
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I 0.810
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.836
OLONG_011157 Oryza longistaminata OLONG_011157 I 0.810
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.836
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.836
ONIVA01G52080 Oryza nivara ONIVA01G52080 I 0.810
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.836
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.836
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.836
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.848
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.861
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.822
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I 0.810
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I 0.810
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.836
OS01G0976800 Oryza sativa OS01G0976800 I 0.810
OS03G0831200 Oryza sativa OS03G0831200 I 0.836
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I 0.810
Pavir.J03766 Panicum virgatum Pavir.J03766 I 0.806
Pavir.J12379 Panicum virgatum Pavir.J12379 I 0.806
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.843
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.861
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.846
PGSC0003DMG400024783 Solanum tuberosum PGSC0003DMG400024783 I 0.809
PK18820.1 Cannabis sativa PK18820.1 I 0.861
PK21934.1 Cannabis sativa PK21934.1 I 0.833
Pm003128 Prunus mume Pm003128 I 0.821
Pm008287 Prunus mume Pm008287 I 0.865
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.847
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.867
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.867
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.865
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.821
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.847
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.847
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.867
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.867
Sb01g002270 Sorghum bicolor Sb01g002270 I 0.806
Sb03g047520 Sorghum bicolor Sb03g047520 I 0.810
Si002983m.g Setaria italica Si002983m.g I 0.810
Si037892m.g Setaria italica Si037892m.g I 0.806
Solyc01g060490.2 Solanum lycopersicum Solyc01g060490.2 N 0.812
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.809
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.846
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.861
TCM_004753 Theobroma cacao TCM_004753 I 0.848
TCM_021303 Theobroma cacao TCM_021303 I 0.865
TCM_026732 Theobroma cacao TCM_026732 I 0.847
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.852
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.846
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.821
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.846
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I 0.810
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I 0.810
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.806
TRIUR3_03165 Triticum urartu TRIUR3_03165 I 0.810
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.861
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.821