MTR_6g032830 (Medicago truncatula)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 MTR_6g032830 T194213_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA6
M01999_2.00
Arabidopsis thaliana
NVRATVNDNN

NNHNBATYBN
PBM
Weirauch et al.(2014)
pTH7317
0.862 0.861
GATA6
M06890_2.00
Arabidopsis thaliana
YAGATCTARAWNH

DNWTYTAGATCTR
Dap-seq
OMalley et al.(2016)
GATA6_col200_a
0.862 0.861
GATA4
M00727_2.00
Arabidopsis thaliana
NNNGATCNNN

NNNGATCNNN
PBM
Chang et al.(2013)
pTH7196
0.848 0.861
GATA4
M06891_2.00
Arabidopsis thaliana
HNNYRGATCYRRWYY

RRWYYRGATCYRNND
Dap-seq
OMalley et al.(2016)
GATA4_col_a
0.848 0.861
GATA1
M01998_2.00
Arabidopsis thaliana
NNNVATBNNN

NNNVATBNNN
PBM
Weirauch et al.(2014)
pTH8144
0.847 0.806
GATA1
M06887_2.00
Arabidopsis thaliana
RYGRTGRTGRTGRTG

CAYCAYCAYCAYCRY
Dap-seq
OMalley et al.(2016)
GATA1_col_a
0.847 0.806
GATA1
M06888_2.00
Arabidopsis thaliana
HNYAGATCYRRWYB

VRWYYRGATCTRND
Dap-seq
OMalley et al.(2016)
GATA1_colamp_a
0.847 0.806
Q76DY3_TOBAC
M10600_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGP1_01
0.847 0.806
GATA7
M02004_2.00
Arabidopsis thaliana
NNNNATNNNN

NNNNATNNNN
PBM
Weirauch et al.(2014)
pTH7658
0.834 0.806
GATA8
M02000_2.00
Arabidopsis thaliana
NNGATYYVN

NBRRATCNN
PBM
Weirauch et al.(2014)
pTH7665
0.832 0.778
GATA9
M02002_2.00
Arabidopsis thaliana
NHAGATCTDNN

NNHAGATCTDN
PBM
Weirauch et al.(2014)
pTH7378
0.832 0.778
GATA12
M00863_2.00
Arabidopsis thaliana
NNNGATBN

NVATCNNN
PBM
Franco-Zorrilla et al.(2014)
GATA12
0.832 0.778
GATA12
M06895_2.00
Arabidopsis thaliana
DWWYYAGATCYRR

YYRGATCTRRWWH
Dap-seq
OMalley et al.(2016)
GATA12_col_a
0.832 0.778
GATA12
M06896_2.00
Arabidopsis thaliana
YRGATCTRRWYYNDN

NHNRRWYYAGATCYR
Dap-seq
OMalley et al.(2016)
GATA12_colamp_a
0.832 0.778
GATA10
M01994_2.00
Arabidopsis thaliana
CAGATCTA

TAGATCTG
PBM
Weirauch et al.(2014)
pTH7615
0.819 0.778
GATA11
M01995_2.00
Arabidopsis thaliana
CAGATCTH

DAGATCTG
PBM
Weirauch et al.(2014)
pTH7486
0.819 0.750
GATA3
M02003_2.00
Arabidopsis thaliana
NNNNGATBNN

NNVATCNNNN
PBM
Weirauch et al.(2014)
pTH7657
0.819 0.750
GATA11
M06882_2.00
Arabidopsis thaliana
HYYAGATCYRRWWHH

DDWWYYRGATCTRRD
Dap-seq
OMalley et al.(2016)
GATA11_col_a
0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES75228 GATA 194 229

Links

Other GATA family TFs
Other Medicago truncatula TFs

609 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29938.m000611 Ricinus communis 29938.m000611 I 0.000
BGIOSGA004939 Oryza indica BGIOSGA004939 N 0.000
BGIOSGA018034 Oryza indica BGIOSGA018034 N 0.000
BRADI2G25050 Brachypodium distachyon BRADI2G25050 N 0.000
BRADI2G57200 Brachypodium distachyon BRADI2G57200 N 0.000
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.000
Ca_15055 Cicer arietinum Ca_15055 I 0.000
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I 0.000
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.000
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.000
GRMZM2G307152 Zea mays GRMZM2G307152 N 0.000
GSMUA_Achr10G04450_001 Musa acuminata GSMUA_Achr10G04450_001 N 0.000
GSMUA_Achr3G21790_001 Musa acuminata GSMUA_Achr3G21790_001 N 0.000
LPERR01G34250 Leersia perrieri LPERR01G34250 N 0.000
LPERR05G13420 Leersia perrieri LPERR05G13420 N 0.000
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.000
OGLUM01G43950 Oryza glumaepatula OGLUM01G43950 N 0.000
OMERI01G36600 Oryza meridionalis OMERI01G36600 N 0.000
OMERI05G14660 Oryza meridionalis OMERI05G14660 N 0.000
ONIVA01G44590 Oryza nivara ONIVA01G44590 N 0.000
ONIVA05G17560 Oryza nivara ONIVA05G17560 N 0.000
OPUNC05G14870 Oryza punctata OPUNC05G14870 N 0.000
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.000
ORGLA05G0145800 Oryza glaberrima ORGLA05G0145800 N 0.000
ORUFI01G43070 Oryza rufipogon ORUFI01G43070 N 0.000
OS01G0885900 Oryza sativa OS01G0885900 N 0.000
OS05G0420300 Oryza sativa OS05G0420300 N 0.000
Pavir.J06813 Panicum virgatum Pavir.J06813 N 0.000
Sb03g042060 Sorghum bicolor Sb03g042060 N 0.000
TRAES3BF106000020CFD_g Triticum aestivum TRAES3BF106000020CFD_g N 0.000