OBART01G45830 (Oryza barthii)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 OBART01G45830 T194352_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG

CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.811 0.833
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART01G45830.1 GATA 24 59

Links

Other GATA family TFs
Other Oryza barthii TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29889.m003248 Ricinus communis 29889.m003248 I 0.814
30128.m008883 Ricinus communis 30128.m008883 N 0.814
AMTR_s00025p00250380 Amborella trichopoda AMTR_s00025p00250380 N 0.809
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N 0.842
BGIOSGA000005 Oryza indica BGIOSGA000005 I 0.867
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.829
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.829
Bo00847s050 Brassica oleracea Bo00847s050 I 0.811
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.811
Bra020650 Brassica rapa Bra020650 I 0.838
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.829
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I 0.856
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.811
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.829
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.829
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.814
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.811
Ca_02992 Cicer arietinum Ca_02992 I 0.810
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.814
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.816
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.828
Cla005266 Citrullus lanatus Cla005266 N 0.828
Cla009422 Citrullus lanatus Cla009422 I 0.816
Cla022104 Citrullus lanatus Cla022104 I 0.811
CME102C Cyanidioschyzon merolae CME102C N 0.805
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.816
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.811
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.811
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.816
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.829
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.829
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.811
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.811
GATA16 Arabidopsis thaliana AT5G49300 D 0.811
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.811
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.814
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.814
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.811
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.828
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.814
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.829
Gorai.013G206400 Gossypium raimondii Gorai.013G206400 N 0.842
GRMZM2G138967 Zea mays GRMZM2G138967 N 0.825
GSMUA_Achr1G14780_001 Musa acuminata GSMUA_Achr1G14780_001 N 0.814
GSMUA_Achr7G03800_001 Musa acuminata GSMUA_Achr7G03800_001 N 0.809
GSMUA_Achr8G33850_001 Musa acuminata GSMUA_Achr8G33850_001 N 0.815
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.810
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.829
LPERR04G11580 Leersia perrieri LPERR04G11580 I 0.867
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.811
Lus10020684.g Linum usitatissimum Lus10020684.g N 0.823
Lus10029863.g Linum usitatissimum Lus10029863.g N 0.823
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.809
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.811
MDP0000309902 Malus domestica MDP0000309902 I 0.809
mgf003937m Mimulus guttatus mgf003937m I 0.811
mgf011737m Mimulus guttatus mgf011737m N 0.814
mgf022078m Mimulus guttatus mgf022078m I 0.815
MLOC_54886 Hordeum vulgare MLOC_54886 I 0.856
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.810
OB01G55040 Oryza brachyantha OB01G55040 I 0.867
OBART03G39750 Oryza barthii OBART03G39750 I 0.829
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I 0.867
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.829
OLONG_011157 Oryza longistaminata OLONG_011157 I 0.867
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.829
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.829
ONIVA01G52080 Oryza nivara ONIVA01G52080 I 0.867
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.829
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.829
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.829
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.814
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.816
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.828
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I 0.867
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I 0.867
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.829
OS01G0976800 Oryza sativa OS01G0976800 I 0.867
OS03G0831200 Oryza sativa OS03G0831200 I 0.829
Pavir.Ab00108 Panicum virgatum Pavir.Ab00108 N 0.825
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I 0.856
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.816
PK18820.1 Cannabis sativa PK18820.1 I 0.816
PK21934.1 Cannabis sativa PK21934.1 I 0.814
Pm003128 Prunus mume Pm003128 I 0.841
Pm008287 Prunus mume Pm008287 I 0.811
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.829
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.810
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.810
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.811
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.841
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.829
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.829
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.810
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.810
Sb03g047520 Sorghum bicolor Sb03g047520 I 0.856
Si002983m.g Setaria italica Si002983m.g I 0.856
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.816
TCM_004753 Theobroma cacao TCM_004753 I 0.814
TCM_021303 Theobroma cacao TCM_021303 I 0.811
TCM_026732 Theobroma cacao TCM_026732 I 0.829
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.811
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I 0.856
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I 0.856
TRIUR3_03165 Triticum urartu TRIUR3_03165 I 0.856
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.816
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.856