ORGLA01G0208300 (Oryza glaberrima)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 ORGLA01G0208300 T194507_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA19
M06893_2.00
Arabidopsis thaliana
BNGATCBGATY

RATCVGATCNV
Dap-seq
OMalley et al.(2016)
GATA19_col_a
0.853 0.972
GATA19
M06894_2.00
Arabidopsis thaliana
HNGATCBGATY

RATCVGATCND
Dap-seq
OMalley et al.(2016)
GATA19_colamp_a
0.853 0.972
GATA20
M06884_2.00
Arabidopsis thaliana
GATCBGAT

ATCVGATC
Dap-seq
OMalley et al.(2016)
GATA20_col_a
0.812 0.917
GATA20
M06885_2.00
Arabidopsis thaliana
HNGATCNGATBND

HNVATCNGATCND
Dap-seq
OMalley et al.(2016)
GATA20_colamp_a
0.812 0.917
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA01G0208300.1 GATA 124 159

Links

Other GATA family TFs
Other Oryza glaberrima TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29917.m001977 Ricinus communis 29917.m001977 I 0.000
30147.m013937 Ricinus communis 30147.m013937 I 0.000
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.000
Bo2g144970 Brassica oleracea Bo2g144970 I 0.000
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.000
Bra025299 Brassica rapa Bra025299 I 0.000
Bra033027 Brassica rapa Bra033027 I 0.000
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.000
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.000
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.000
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.000
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.000
Ca_07482 Cicer arietinum Ca_07482 I 0.000
Ca_17087 Cicer arietinum Ca_17087 I 0.000
Ca_17294 Cicer arietinum Ca_17294 I 0.000
Ca_19427 Cicer arietinum Ca_19427 I 0.000
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.000
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.000
Cla010586 Citrullus lanatus Cla010586 I 0.000
Cla019490 Citrullus lanatus Cla019490 I 0.000
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.000
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.000
evm.TU.supercontig_108.29 Carica papaya evm.TU.supercontig_108.29 I 0.000
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.000
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.000
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.000
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.000
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.000
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.000
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N 0.000
GSMUA_Achr3G09050_001 Musa acuminata GSMUA_Achr3G09050_001 N 0.000
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.000
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.000
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.000
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.000
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.000
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.000
MDP0000199939 Malus domestica MDP0000199939 I 0.000
MDP0000215359 Malus domestica MDP0000215359 I 0.000
mgf024290m Mimulus guttatus mgf024290m I 0.000
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.000
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.000
MTR_7g037260 Medicago truncatula MTR_7g037260 I 0.000
MYB118 Arabidopsis thaliana AT3G27785 D 0.000
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.000
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.000
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.000
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.000
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.000
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.000
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.000
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.000
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.000
Pm024743 Prunus mume Pm024743 I 0.000
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.000
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.000
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.000
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.000
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.000
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.000
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.000
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.000
TCM_012087 Theobroma cacao TCM_012087 I 0.000
TCM_016909 Theobroma cacao TCM_016909 I 0.000
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.000
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I 0.000