PGSC0003DMG400002337 (Solanum tuberosum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 PGSC0003DMG400002337 T194699_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.817 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400006011 GATA 60 95

Links

Other GATA family TFs
Other Solanum tuberosum TFs

221 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000309902 Malus domestica MDP0000309902 I 0.847
Ca_02992 Cicer arietinum Ca_02992 I 0.843
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.843
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.843
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.843
29889.m003248 Ricinus communis 29889.m003248 I 0.843
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.843
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.843
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.843
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.843
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.843
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.843
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.842
Pm008287 Prunus mume Pm008287 I 0.842
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.842
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.842
PK18820.1 Cannabis sativa PK18820.1 I 0.842
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.842
Cla022104 Citrullus lanatus Cla022104 I 0.842
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.842
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.842
Cla009422 Citrullus lanatus Cla009422 I 0.842
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.842
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.842
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.842
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.842
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.842
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.842
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.842
TCM_021303 Theobroma cacao TCM_021303 I 0.842
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.842
mgf003937m Mimulus guttatus mgf003937m I 0.842
PK21934.1 Cannabis sativa PK21934.1 I 0.842
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.842
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.842
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.833
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.832
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.832
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.832
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.832
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.832
GATA17 Arabidopsis thaliana AT3G16870 I 0.832
Solyc01g060490.2 Solanum lycopersicum Solyc01g060490.2 N 0.831
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.830
TCM_004753 Theobroma cacao TCM_004753 I 0.830
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.830
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.830
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.828
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.828
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.828
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.828
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.828
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.828
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.828
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.828
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.828
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.828
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.828
Bo5g123610 Brassica oleracea Bo5g123610 I 0.828
Bo7g104200 Brassica oleracea Bo7g104200 I 0.828
Bra012742 Brassica rapa Bra012742 I 0.828
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.828
Bo3g068560 Brassica oleracea Bo3g068560 I 0.828
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.828
Bo00847s050 Brassica oleracea Bo00847s050 I 0.828
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.828
Bo1g055120 Brassica oleracea Bo1g055120 I 0.828
Bo1g122970 Brassica oleracea Bo1g122970 I 0.828
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.828
Bra021209 Brassica rapa Bra021209 I 0.828
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.828
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.828
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.828
Bra022184 Brassica rapa Bra022184 I 0.828
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.828
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.828
Bra033533 Brassica rapa Bra033533 I 0.828
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.828
TCM_026732 Theobroma cacao TCM_026732 I 0.828
PGSC0003DMG400024783 Solanum tuberosum PGSC0003DMG400024783 I 0.819
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.819
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.817
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.817
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.817
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.817
OBART03G39750 Oryza barthii OBART03G39750 I 0.817
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.817
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.817
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.817
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.817
OS03G0831200 Oryza sativa OS03G0831200 I 0.817
GATA16 Arabidopsis thaliana AT5G49300 D 0.817
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.817
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.817
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.817
Lus10029863.g Linum usitatissimum Lus10029863.g N 0.816
Aquca_020_00467 Aquilegia coerulea Aquca_020_00467 N 0.805
SapurV1A.0086s0290 Salix purpurea SapurV1A.0086s0290 N 0.805
Pavir.Db01250 Panicum virgatum Pavir.Db01250 N 0.805
Pavir.Ab00790 Panicum virgatum Pavir.Ab00790 N 0.805
orange1.1g021859m.g Citrus sinensis orange1.1g021859m.g N 0.805
Bostr.26833s0575 Boechera stricta Bostr.26833s0575 N 0.805
Pavir.Aa02907 Panicum virgatum Pavir.Aa02907 N 0.805
Pavir.Da00760 Panicum virgatum Pavir.Da00760 N 0.805
mgf025842m Mimulus guttatus mgf025842m N 0.805
orange1.1g021329m.g Citrus sinensis orange1.1g021329m.g N 0.805
chr5.CM0019.380.nc Lotus japonicus chr5.CM0019.380.nc N 0.805
chr4.CM0244.740.nd Lotus japonicus chr4.CM0244.740.nd N 0.805
Thhalv10025461m.g Eutrema salsugineum Thhalv10025461m.g N 0.805
Thhalv10013793m.g Eutrema salsugineum Thhalv10013793m.g N 0.805
PK07593.1 Cannabis sativa PK07593.1 N 0.805
Cucsa.353330 Cucumis sativus Cucsa.353330 N 0.805
mgf008387m Mimulus guttatus mgf008387m N 0.805
Cucsa.397360 Cucumis sativus Cucsa.397360 N 0.805
Carubv10005113m.g Capsella rubella Carubv10005113m.g N 0.805
Ciclev10008968m.g Citrus clementina Ciclev10008968m.g N 0.805
Ciclev10008943m.g Citrus clementina Ciclev10008943m.g N 0.805
Gorai.009G031400 Gossypium raimondii Gorai.009G031400 N 0.805
Carubv10026556m.g Capsella rubella Carubv10026556m.g N 0.805
cassava43851.valid.m1 Manihot esculenta cassava43851.valid.m1 N 0.805
Ciclev10009004m.g Citrus clementina Ciclev10009004m.g N 0.805
Eucgr.C03048 Eucalyptus grandis Eucgr.C03048 N 0.805
evm.TU.supercontig_93.28 Carica papaya evm.TU.supercontig_93.28 N 0.805
gene02686-v1.0-hybrid Fragaria vesca gene02686-v1.0-hybrid N 0.805
gene12624-v1.0-hybrid Fragaria vesca gene12624-v1.0-hybrid N 0.805
Gorai.009G045000 Gossypium raimondii Gorai.009G045000 N 0.805
Gorai.010G082800 Gossypium raimondii Gorai.010G082800 N 0.805
MDP0000739900 Malus domestica MDP0000739900 N 0.805
Cagra.4138s0005 Capsella grandiflora Cagra.4138s0005 N 0.805
Cagra.3467s0056 Capsella grandiflora Cagra.3467s0056 N 0.805
orange1.1g020987m.g Citrus sinensis orange1.1g020987m.g N 0.805
Eucgr.C03895 Eucalyptus grandis Eucgr.C03895 N 0.805
MDP0000237740 Malus domestica MDP0000237740 N 0.805
Gorai.010G101100 Gossypium raimondii Gorai.010G101100 N 0.805
MDP0000131803 Malus domestica MDP0000131803 N 0.805
MDP0000190038 Malus domestica MDP0000190038 N 0.805
Bostr.7867s0434 Boechera stricta Bostr.7867s0434 N 0.805
TCM_037666 Theobroma cacao TCM_037666 N 0.805
GSMUA_Achr8G24880_001 Musa acuminata GSMUA_Achr8G24880_001 N 0.805
LPERR02G07780 Leersia perrieri LPERR02G07780 N 0.805
LPERR06G15680 Leersia perrieri LPERR06G15680 N 0.805
MLOC_10364 Hordeum vulgare MLOC_10364 N 0.805
GSMUA_Achr4G30820_001 Musa acuminata GSMUA_Achr4G30820_001 N 0.805
GSMUA_Achr10G27510_001 Musa acuminata GSMUA_Achr10G27510_001 N 0.805
GLYMA17G34670 Glycine max GLYMA17G34670 N 0.805
GRMZM2G031983 Zea mays GRMZM2G031983 N 0.805
GRMZM2G039586 Zea mays GRMZM2G039586 N 0.805
MLOC_70809 Hordeum vulgare MLOC_70809 N 0.805
MTR_1g016170 Medicago truncatula MTR_1g016170 N 0.805
OBART06G19060 Oryza barthii OBART06G19060 N 0.805
OGLUM02G09200 Oryza glumaepatula OGLUM02G09200 N 0.805
OGLUM06G20240 Oryza glumaepatula OGLUM06G20240 N 0.805
OBART02G08990 Oryza barthii OBART02G08990 N 0.805
OB06G26630 Oryza brachyantha OB06G26630 N 0.805
MTR_2g038720 Medicago truncatula MTR_2g038720 N 0.805
MTR_4g126350 Medicago truncatula MTR_4g126350 N 0.805
OB02G18010 Oryza brachyantha OB02G18010 N 0.805
GLYMA17G06290 Glycine max GLYMA17G06290 N 0.805
GLYMA15G18380 Glycine max GLYMA15G18380 N 0.805
Bo1g042950 Brassica oleracea Bo1g042950 N 0.805
Bo2g033970 Brassica oleracea Bo2g033970 N 0.805
Bo7g110740 Brassica oleracea Bo7g110740 N 0.805
Bo9g127360 Brassica oleracea Bo9g127360 N 0.805
BGIOSGA023119 Oryza indica BGIOSGA023119 N 0.805
BGIOSGA023117 Oryza indica BGIOSGA023117 N 0.805
GATA22 Arabidopsis thaliana AT4G26150 N 0.805
GATA21 Arabidopsis thaliana AT5G56860 N 0.805
BGIOSGA006859 Oryza indica BGIOSGA006859 N 0.805
Bra002788 Brassica rapa Bra002788 N 0.805
Bra019118 Brassica rapa Bra019118 N 0.805
GNC Arabidopsis lyrata fgenesh2_kg.8__1592__AT5G56860.1 N 0.805
GLYMA04G05431 Glycine max GLYMA04G05431 N 0.805
GLYMA13G00200 Glycine max GLYMA13G00200 N 0.805
CGA1 Arabidopsis lyrata fgenesh2_kg.7__1630__AT4G26150.1 N 0.805
BRADI3G08240 Brachypodium distachyon BRADI3G08240 N 0.805
Bra026461 Brassica rapa Bra026461 N 0.805
Bra035633 Brassica rapa Bra035633 N 0.805
BRADI1G37480 Brachypodium distachyon BRADI1G37480 N 0.805
cassava33236.m1 Manihot esculenta cassava33236.m1 N 0.805
OMERI02G10250 Oryza meridionalis OMERI02G10250 N 0.805
Traes_6AS_1BF0823061 Triticum aestivum Traes_6AS_1BF0823061 N 0.805
Traes_6AS_1BF082306 Triticum aestivum Traes_6AS_1BF082306 N 0.805
Traes_6BS_4EA352A7A Triticum aestivum Traes_6BS_4EA352A7A N 0.805
AMTR_s00064p00107710 Amborella trichopoda AMTR_s00064p00107710 N 0.805
TCM_037285 Theobroma cacao TCM_037285 N 0.805
ONIVA06G22870 Oryza nivara ONIVA06G22870 N 0.805
Solyc07g038160.2 Solanum lycopersicum Solyc07g038160.2 N 0.805
Solyc12g008830.1 Solanum lycopersicum Solyc12g008830.1 N 0.805
Traes_6DS_77038429A Triticum aestivum Traes_6DS_77038429A N 0.805
Traes_7BL_86BB5C61E Triticum aestivum Traes_7BL_86BB5C61E N 0.805
Pm005502 Prunus mume Pm005502 N 0.805
Pm027164 Prunus mume Pm027164 N 0.805
29794.m003323 Ricinus communis 29794.m003323 N 0.805
Cla021191 Citrullus lanatus Cla021191 N 0.805
VIT_11s0016g02210 Vitis vinifera VIT_11s0016g02210 N 0.805
Traes_7DL_BFADB408C Triticum aestivum Traes_7DL_BFADB408C N 0.805
VIT_04s0008g01290 Vitis vinifera VIT_04s0008g01290 N 0.805
Si019058m.g Setaria italica Si019058m.g N 0.805
Si006733m.g Setaria italica Si006733m.g N 0.805
ORUFI06G20160 Oryza rufipogon ORUFI06G20160 N 0.805
OS02G0220400 Oryza sativa OS02G0220400 N 0.805
OS06G0571800 Oryza sativa OS06G0571800 N 0.805
ORUFI02G09020 Oryza rufipogon ORUFI02G09020 N 0.805
ORGLA06G0158200 Oryza glaberrima ORGLA06G0158200 N 0.805
ONIVA11G03260 Oryza nivara ONIVA11G03260 N 0.805
OPUNC02G08040 Oryza punctata OPUNC02G08040 N 0.805
OPUNC06G17260 Oryza punctata OPUNC06G17260 N 0.805
29912.m005322 Ricinus communis 29912.m005322 N 0.805
PGSC0003DMG400000280 Solanum tuberosum PGSC0003DMG400000280 N 0.805
PRUPE_ppa024374mg Prunus persica PRUPE_ppa024374mg N 0.805
Sb04g007750 Sorghum bicolor Sb04g007750 N 0.805
Sb10g022580 Sorghum bicolor Sb10g022580 N 0.805
PGSC0003DMG400004493 Solanum tuberosum PGSC0003DMG400004493 N 0.805
PRUPE_ppa018120mg Prunus persica PRUPE_ppa018120mg N 0.805
cassava32152.m1 Manihot esculenta cassava32152.m1 N 0.805
POPTR_0018s05160 Populus trichocarpa POPTR_0018s05160 N 0.805
POPTR_0006s24560 Populus trichocarpa POPTR_0006s24560 N 0.805
30128.m008883 Ricinus communis 30128.m008883 N 0.803
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.803
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.803
mgf022078m Mimulus guttatus mgf022078m I 0.803