PGSC0003DMG400024783 (Solanum tuberosum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 PGSC0003DMG400024783 T194717_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.808 0.722
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400063771 GATA 21 56

Links

Other GATA family TFs
Other Solanum tuberosum TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.867
mgf022078m Mimulus guttatus mgf022078m I 0.851
PK21934.1 Cannabis sativa PK21934.1 I 0.840
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.837
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.837
OBART03G39750 Oryza barthii OBART03G39750 I 0.837
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.837
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.837
OS03G0831200 Oryza sativa OS03G0831200 I 0.837
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.837
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.837
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.837
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.837
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.837
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.837
MDP0000309902 Malus domestica MDP0000309902 I 0.836
PGSC0003DMG400031828 Solanum tuberosum PGSC0003DMG400031828 N 0.835
Solyc09g075610.2 Solanum lycopersicum Solyc09g075610.2 N 0.835
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.827
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.827
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.826
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.826
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.826
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.826
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.826
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.826
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.826
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.826
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.826
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.826
TCM_026732 Theobroma cacao TCM_026732 I 0.826
Gorai.013G206400 Gossypium raimondii Gorai.013G206400 N 0.825
mgf011737m Mimulus guttatus mgf011737m N 0.825
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.822
GATA17 Arabidopsis thaliana AT3G16870 I 0.822
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.822
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.822
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.822
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.822
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.822
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.822
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.822
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.822
Bra033533 Brassica rapa Bra033533 I 0.822
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.822
Bra021209 Brassica rapa Bra021209 I 0.822
Bra012742 Brassica rapa Bra012742 I 0.822
Bo1g055120 Brassica oleracea Bo1g055120 I 0.822
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.822
Bo1g122970 Brassica oleracea Bo1g122970 I 0.822
Bo3g068560 Brassica oleracea Bo3g068560 I 0.822
Bo5g123610 Brassica oleracea Bo5g123610 I 0.822
Bra022184 Brassica rapa Bra022184 I 0.822
Bo7g104200 Brassica oleracea Bo7g104200 I 0.822
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.821
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.819
TCM_004753 Theobroma cacao TCM_004753 I 0.814
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.814
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.814
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.814
29889.m003248 Ricinus communis 29889.m003248 I 0.814
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.814
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.814
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.814
PK18820.1 Cannabis sativa PK18820.1 I 0.813
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.813
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.813
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.813
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.813
Cla009422 Citrullus lanatus Cla009422 I 0.813
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.813
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.813
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.813
GSMUA_Achr1G14780_001 Musa acuminata GSMUA_Achr1G14780_001 N 0.810
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.809
Ca_02992 Cicer arietinum Ca_02992 I 0.809
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.809
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.809
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.809
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.809
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.809
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.808
GATA16 Arabidopsis thaliana AT5G49300 D 0.808
mgf003937m Mimulus guttatus mgf003937m I 0.808
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.808
Bo00847s050 Brassica oleracea Bo00847s050 I 0.808
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.808
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.808
Cla022104 Citrullus lanatus Cla022104 I 0.808
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.808
Pm008287 Prunus mume Pm008287 I 0.808
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.808
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.808
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.808
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.808
TCM_021303 Theobroma cacao TCM_021303 I 0.808
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.808
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.808
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.808
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.808
F775_43556 Aegilops tauschii F775_43556 I 0.806
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.806