POPTR_0010s00360 (Populus trichocarpa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 POPTR_0010s00360 T194896_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG

CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.841 0.889
GATA15
M01997_2.00
Arabidopsis thaliana
NNHGATCNN

NNGATCDNN
PBM
Weirauch et al.(2014)
pTH7662
0.821 0.889
GATA15
M06886_2.00
Arabidopsis thaliana
GATGATGATGATGATGATS

SATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
GATA15_col_b
0.821 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s00360.1 GATA 34 69
POPTR_0010s00360.2 GATA 30 65
POPTR_0010s00360.3 GATA 30 65

Links

Other GATA family TFs
Other Populus trichocarpa TFs

Invalid Input OrderBy

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action