POPTR_0017s06980 (Populus trichocarpa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 POPTR_0017s06980 T194903_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA28
M01996_2.00
Arabidopsis thaliana
NNGATNN

NNATCNN
PBM
Weirauch et al.(2014)
pTH7505
0.842 0.750
GATA28
M06883_2.00
Arabidopsis thaliana
GATGATGATGATGATGATG

CATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
ZML2_col_a
0.842 0.750
GATA24
M01941_2.00
Arabidopsis thaliana
HGATBNN

NNVATCD
PBM
Weirauch et al.(2014)
pTH7661
0.831 0.722
OS06G0698900
M02015_2.00
Oryza sativa
NNNNAHBNN

NNVDTNNNN
PBM
Weirauch et al.(2014)
pTH8641
0.831 0.722
ZIM
M06892_2.00
Arabidopsis thaliana
AWYSRACGGYYVWGA

TCWBRRCCGTYSRWT
Dap-seq
OMalley et al.(2016)
ZIM_col_a
0.805 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0017s06980.1 GATA 46 83

Links

Other GATA family TFs
Other Populus trichocarpa TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I 0.856
Cla013127 Citrullus lanatus Cla013127 I 0.856
Pm022163 Prunus mume Pm022163 I 0.856
Cucsa.218190 Cucumis sativus Cucsa.218190 I 0.856
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I 0.856
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I 0.856
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I 0.856
29838.m001724 Ricinus communis 29838.m001724 I 0.856
mgf016112m Mimulus guttatus mgf016112m I 0.845
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I 0.845
TCM_007360 Theobroma cacao TCM_007360 I 0.845
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I 0.845
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I 0.842
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I 0.842
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I 0.842
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I 0.842
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I 0.842
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I 0.842
ZML2 Arabidopsis lyrata scaffold_104929.1 I 0.842
GATA28 Arabidopsis thaliana AT1G51600 D 0.842
Bra014292 Brassica rapa Bra014292 I 0.832
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I 0.831
Pm013048 Prunus mume Pm013048 I 0.831
Cla015736 Citrullus lanatus Cla015736 I 0.831
Bra031258 Brassica rapa Bra031258 I 0.831
F775_08559 Aegilops tauschii F775_08559 I 0.831
Bo5g103560 Brassica oleracea Bo5g103560 I 0.831
Cucsa.359570 Cucumis sativus Cucsa.359570 I 0.831
Bo3g181450 Brassica oleracea Bo3g181450 I 0.831
Bra023900 Brassica rapa Bra023900 I 0.831
Ca_17522 Cicer arietinum Ca_17522 I 0.831
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I 0.831
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I 0.831
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I 0.831
GRMZM2G058479 Zea mays GRMZM2G058479 I 0.831
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I 0.831
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I 0.831
TRIUR3_32095 Triticum urartu TRIUR3_32095 I 0.831
TRIUR3_11107 Triticum urartu TRIUR3_11107 I 0.831
Bo1g108240 Brassica oleracea Bo1g108240 I 0.831
BGIOSGA020596 Oryza indica BGIOSGA020596 I 0.831
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I 0.831
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I 0.831
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I 0.831
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I 0.831
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I 0.831
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I 0.831
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I 0.831
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I 0.831
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I 0.831
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I 0.831
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I 0.831
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I 0.831
BGIOSGA007539 Oryza indica BGIOSGA007539 I 0.831
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I 0.831
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I 0.831
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I 0.831
Carubv10016131m.g Capsella rubella Carubv10016131m.g I 0.831
Carubv10009866m.g Capsella rubella Carubv10009866m.g I 0.831
TCM_027858 Theobroma cacao TCM_027858 I 0.831
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I 0.831
OBART06G26250 Oryza barthii OBART06G26250 I 0.831
OBART02G03780 Oryza barthii OBART02G03780 I 0.831
OB06G33840 Oryza brachyantha OB06G33840 I 0.831
OB02G13220 Oryza brachyantha OB02G13220 I 0.831
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I 0.831
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I 0.831
OMERI06G26410 Oryza meridionalis OMERI06G26410 I 0.831
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I 0.831
OLONG_015069 Oryza longistaminata OLONG_015069 I 0.831
MLOC_3107 Hordeum vulgare MLOC_3107 I 0.831
MLOC_17061 Hordeum vulgare MLOC_17061 I 0.831
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I 0.831
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I 0.831
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I 0.831
GRMZM2G080509 Zea mays GRMZM2G080509 I 0.831
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I 0.831
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I 0.831
LPERR11G14110 Leersia perrieri LPERR11G14110 I 0.831
LPERR06G21800 Leersia perrieri LPERR06G21800 I 0.831
LPERR02G03330 Leersia perrieri LPERR02G03330 I 0.831
ONIVA02G03810 Oryza nivara ONIVA02G03810 I 0.831
OMERI02G04610 Oryza meridionalis OMERI02G04610 I 0.831
GATA17 Oryza sativa OS02G0148500 I 0.831
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I 0.831
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I 0.831
ONIVA06G28780 Oryza nivara ONIVA06G28780 I 0.831
OS06G0698900 Oryza sativa OS06G0698900 D 0.831
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I 0.831
GLYMA08G23720 Glycine max GLYMA08G23720 I 0.831
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I 0.831
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I 0.831
OPUNC02G02970 Oryza punctata OPUNC02G02970 I 0.831
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I 0.831
Si006750m.g Setaria italica Si006750m.g I 0.831
OPUNC06G23830 Oryza punctata OPUNC06G23830 I 0.831
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I 0.831
GATA24 Arabidopsis thaliana AT3G21175 D 0.831
Sb10g028750 Sorghum bicolor Sb10g028750 I 0.831
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I 0.831
PK11000.1 Cannabis sativa PK11000.1 I 0.825
BRADI3G03800 Brachypodium distachyon BRADI3G03800 I 0.817
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I 0.805
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I 0.805
MTR_3g100050 Medicago truncatula MTR_3g100050 I 0.805
Bostr.7867s0254 Boechera stricta Bostr.7867s0254 I 0.805
Bo1g039000 Brassica oleracea Bo1g039000 I 0.805
Bra013805 Brassica rapa Bra013805 I 0.805
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I 0.805
Carubv10006355m.g Capsella rubella Carubv10006355m.g I 0.805
Ca_01471 Cicer arietinum Ca_01471 I 0.805
ZIM Arabidopsis thaliana AT4G24470 D 0.805
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I 0.805