CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SELMODRAFT_442360
(
Selaginella moellendorffii
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
SELMODRAFT_442360
T195165_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA28
M01996_2.00
Arabidopsis thaliana
NNGATNN
NNATCNN
PBM
Weirauch et al.(2014)
pTH7505
0.812
0.750
GATA28
M06883_2.00
Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
ZML2_col_a
0.812
0.750
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFJ25137
GATA
212
249
CQGCGCASGTTPMMRKGPAGPKTLCNACGLMWANKGVL
Links
Other
GATA
family TFs
Other
Selaginella moellendorffii
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SELMODRAFT_409922
Selaginella moellendorffii
SELMODRAFT_409922
I
0.867
gw1.68.123.1
Physcomitrella patens
gw1.68.123.1
I
0.812
Aquca_007_00522
Aquilegia coerulea
Aquca_007_00522
I
0.812
fgenesh2_pm.scaffold_111000001
Physcomitrella patens
fgenesh2_pm.scaffold_111000001
I
0.812
e_gw1.226.30.1
Physcomitrella patens
e_gw1.226.30.1
I
0.812
ZML2
Arabidopsis lyrata
scaffold_104929.1
I
0.812
GATA28
Arabidopsis thaliana
AT1G51600
D
0.812
fgenesh1_pm.scaffold_69000012
Physcomitrella patens
fgenesh1_pm.scaffold_69000012
I
0.812