CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Traes_1AL_A1EA76E83
(
Triticum aestivum
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
Traes_1AL_A1EA76E83
T195453_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA19
M06893_2.00
Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV
Dap-seq
OMalley et al.(2016)
GATA19_col_a
0.862
0.944
GATA19
M06894_2.00
Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND
Dap-seq
OMalley et al.(2016)
GATA19_colamp_a
0.862
0.944
GATA20
M06884_2.00
Arabidopsis thaliana
GATCBGAT
ATCVGATC
Dap-seq
OMalley et al.(2016)
GATA20_col_a
0.820
0.889
GATA20
M06885_2.00
Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND
Dap-seq
OMalley et al.(2016)
GATA20_colamp_a
0.820
0.889
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Traes_1AL_A1EA76E83.2
GATA
112
147
CANCGTASTPLWRNGPRGPKSLCNACGIRFKKEERR
Links
Other
GATA
family TFs
Other
Triticum aestivum
TFs
132 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy