CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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elt-6
(
Caenorhabditis elegans
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
WBGene00001253
T195705_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
elt-6
M00666_2.00
Caenorhabditis elegans
NTGATAAN
NTTATCAN
PBM
Narasimhan et al.(2015)
pTH10707
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CBG13549
M01231_2.00
Caenorhabditis briggsae
NTGATAAN
NTTATCAN
PBM
Lambert et al.(2019)
pTH11492
0.851
0.943
For this family, TFs with SR scores >
0.802
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00666_2.00
GATA
51
85
CSNCSTIKTTAWRRDLEGKLVCNACGLYYRLHRTH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
F52C12.5.1
GATA
265
299
CSNCSTIKTTAWRRDLEGKLVCNACGLYYRLHRTH
F52C12.5.2
GATA
265
299
CSNCSTIKTTAWRRDLEGKLVCNACGLYYRLHRTH
Links
Other
GATA
family TFs
Other
Caenorhabditis elegans
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CJA18864
Caenorhabditis japonica
CJA18864
I
0.861
egl-18
Caenorhabditis elegans
WBGene00001186
I
0.861
CRE31381
Caenorhabditis remanei
CRE31381
I
0.861
BXY_0772600
Bursaphelenchus xylophilus
BXY_0772600
I
0.861
CBG13548
Caenorhabditis briggsae
CBG13548
I
0.861
nDi.2.2.2.g02293
Dirofilaria immitis
nDi.2.2.2.g02293
I
0.851
WUBG_10387
Wuchereria bancrofti
WUBG_10387
I
0.851
DICVIV_08848
Dictyocaulus viviparus
DICVIV_08848
I
0.851
GPLIN_000855200
Globodera pallida
GPLIN_000855200
I
0.851
NECAME_05031
Necator americanus
NECAME_05031
I
0.851
nAv.1.0.1.g03924
Acanthocheilonema viteae
nAv.1.0.1.g03924
I
0.851
nOo.2.0.1.g08948
Onchocerca ochengi
nOo.2.0.1.g08948
I
0.851
scaffold1033-EXSNAP2012.2
Pristionchus exspectatus
scaffold1033-EXSNAP2012.2
I
0.851
TCLT_0000574501
Thelazia callipaeda
TCLT_0000574501
I
0.851
scaffold1024-EXSNAP2012.4
Pristionchus exspectatus
scaffold1024-EXSNAP2012.4
I
0.851
OFLC_0000492601
Onchocerca flexuosa
OFLC_0000492601
I
0.851
ASU_04064
Ascaris suum
ASU_04064
I
0.851
OESDEN_09249
Oesophagostomum dentatum
OESDEN_09249
I
0.851
nLs.2.1.2.g04395
Litomosoides sigmodontis
nLs.2.1.2.g04395
I
0.851
Hba_15007
Heterorhabditis bacteriophora
Hba_15007
I
0.851
ASIM_0001333801
Anisakis simplex
ASIM_0001333801
I
0.851
ACAC_0000752101
Angiostrongylus cantonensis
ACAC_0000752101
I
0.851
WBGene00241875
Onchocerca volvulus
WBGene00241875
I
0.851
LOAG_07460
Loa loa
LOAG_07460
I
0.851
CJA11149
Caenorhabditis japonica
CJA11149
I
0.851
CRE31380
Caenorhabditis remanei
CRE31380
I
0.851
ACOC_0000580401
Angiostrongylus costaricensis
ACOC_0000580401
I
0.851
CBG13549
Caenorhabditis briggsae
CBG13549
D
0.851
ANCCAN_00554
Ancylostoma caninum
ANCCAN_00554
I
0.851
Bm4254
Brugia malayi
Bm4254
I
0.851
ANCCEY_12899
Ancylostoma ceylanicum
ANCCEY_12899
I
0.851
ALUE_0001545901
Ascaris lumbricoides
ALUE_0001545901
I
0.851
nRc.2.0.1.g15145
Romanomermis culicivorax
nRc.2.0.1.g15145
I
0.850
SPAL_0001590300
Strongyloides papillosus
SPAL_0001590300
I
0.850
SVE_0995400
Strongyloides venezuelensis
SVE_0995400
I
0.850
PTRK_0001379700
Parastrongyloides trichosuri
PTRK_0001379700
I
0.850
SBAD_0000818101
Soboliphyme baturini
SBAD_0000818101
I
0.850
CBN10937
Caenorhabditis brenneri
CBN10937
I
0.850
SSTP_0001171300
Strongyloides stercoralis
SSTP_0001171300
I
0.850
EVEC_0001284001
Enterobius vermicularis
EVEC_0001284001
I
0.847
SMUV_0001093901
Syphacia muris
SMUV_0001093901
I
0.845
Minc08374
Meloidogyne incognita
Minc08374
I
0.838
L889_g31947
Steinernema feltiae
L889_g31947
I
0.838
L596_g25881
Steinernema carpocapsae
L596_g25881
I
0.838
HCOI01886300
Haemonchus contortus
HCOI01886300
I
0.838
L892_g6412
Steinernema scapterisci
L892_g6412
I
0.838
L893_g28710
Steinernema glaseri
L893_g28710
I
0.838
NBR_0001940901
Nippostrongylus brasiliensis
NBR_0001940901
I
0.838
maker-nMf.1.1.scaf08707-augustus-gene-0.3
Meloidogyne floridensis
maker-nMf.1.1.scaf08707-augustus-gene-0.3
I
0.838
L898_g8209
Steinernema monticolum
L898_g8209
I
0.838
RSKR_0000556500
Rhabditophanes kr3021
RSKR_0000556500
I
0.836