med-2 (Caenorhabditis elegans)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 WBGene00003181 T195710_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in endodermal cell fate specification and pharynx development. Predicted to be located in nucleus. Is expressed in E; EMS; MS; and gonad. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
med-2
M00669_2.00		 Caenorhabditis elegans
NGKATACYNN
NNRGTATMCN		 PBM
Narasimhan et al.(2015)
pTH10768		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.802 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00669_2.00 GATA 51 86

DNA Binding Domains

Protein ID Domain From To Sequence
K04C2.6 GATA 114 149

Links

Other GATA family TFs
Other Caenorhabditis elegans TFs

1 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
med-1 Caenorhabditis elegans WBGene00003180 I 0.867