CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLN3
(
Saccharomyces cerevisiae
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
YER040W
T195737_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in regulation of protein localization by the Cvt pathway and regulation of transcription by RNA polymerase II. Located in cytosol and nucleus. Human ortholog(s) of this gene implicated in several diseases, including Down syndrome; X-linked recessive disease (multiple); adenocarcinoma (multiple); congenital heart disease (multiple); and hematologic cancer (multiple). Orthologous to several human genes including GATA1 (GATA binding protein 1); GATA2 (GATA binding protein 2); and GATA3 (GATA binding protein 3). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GLN3
M00048_2.00
Saccharomyces cerevisiae
NHGATAAS
STTATCDN
PBM
Badis et al.(2008)
GLN3_2032
(Direct)
(Direct)
GLN3
M01545_2.00
Saccharomyces cerevisiae
HGATARN
NYTATCD
PBM
Zhu et al.(2009)
Gln3
(Direct)
(Direct)
GLN3
M07477_2.00
Saccharomyces cerevisiae
GATWR
YWATC
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0307.1
(Direct)
(Direct)
GLN3
M08559_2.00
Saccharomyces cerevisiae
GATWR
YWATC
Misc
DeBoer et al.(2011)
YER040W_539
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.802
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00048_2.00
GATA
51
85
CFNCKTFKTPLWRRSPEGNTLCNACGLFQKLHGTM
M01545_2.00
GATA
306
340
CFNCKTFKTPLWRRSPEGNTLCNACGLFQKLHGTM
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YER040W
GATA
306
340
CFNCKTFKTPLWRRSPEGNTLCNACGLFQKLHGTM
Links
Other
GATA
family TFs
Other
Saccharomyces cerevisiae
TFs
18 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy