Cla009422 (Citrullus lanatus)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cla009422 T195871_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG

CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.838 0.889
GATA15
M01997_2.00
Arabidopsis thaliana
NNHGATCNN

NNGATCDNN
PBM
Weirauch et al.(2014)
pTH7662
0.818 0.889
GATA15
M06886_2.00
Arabidopsis thaliana
GATGATGATGATGATGATS

SATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
GATA15_col_b
0.818 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla009422 GATA 29 64

Links

Other GATA family TFs
Other Citrullus lanatus TFs

Invalid Input OrderBy

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action