Cmyd_10009165 (Chelonia mydas)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cmyd_10009165 T195894_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gata6
M00165_2.00
Mus musculus
NHGATARN

NYTATCDN
PBM
Badis et al.(2009)
Gata6_3769
0.860 0.971
GATA6
M04877_2.00
Homo sapiens
HGATAABVATCD

HGATBVTTATCD
SELEX
Yin et al.(2017)
GATA6_eDBD_HT-SELEX
0.860 0.971
GATA6
M08124_2.00
Homo sapiens
NNNAGATAAGRNN

NNYCTTATCTNNN
ChIP-seq
Mathelier et al.(2014)
MA1104.1
0.860 0.971
GATA6
M09118_2.00
Homo sapiens
NVWGATAAGRNNN

NNNYCTTATCWBN
Misc
Kulakovskiy et al.(2013)
GATA6_HUMAN.H11MO.0.A
0.860 0.971
Gata6
M09120_2.00
Mus musculus
NVWGATAAGV

BCTTATCWBN
Misc
Kulakovskiy et al.(2013)
GATA6_MOUSE.H11MO.0.A
0.860 0.971
GATA6
M10592_2.00
Homo sapiens
NNHGATWDNN

NNHWATCDNN
Transfac
Matys et al.(2006)
V$GATA6_01
0.860 0.971
GATA6
M10593_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA6_Q5
0.860 0.971
GATA6
M04878_2.00
Homo sapiens
HGATAABRATCW

WGATYVTTATCD
SELEX
Yin et al.(2017)
GATA6_eDBD_Methyl-HT-SELEX
0.860 0.971
Gata4
M00799_2.00
Mus musculus
NHGATWDNN

NNHWATCDN
PBM
Weirauch et al.(2013)
pTH1049
0.855 0.886
GATA4
M03066_2.00
Homo sapiens
HGATAAVV

BBTTATCD
SELEX
Jolma et al.(2013)
GATA4_1
0.855 0.886
GATA4
M04875_2.00
Homo sapiens
NHGATAASVN

NBSTTATCDN
SELEX
Yin et al.(2017)
GATA4_eDBD_HT-SELEX
0.855 0.886
Gata4
M08126_2.00
Mus musculus
NDVAGATAAGR

YCTTATCTBHN
ChIP-seq
Mathelier et al.(2014)
MA0482.1
0.855 0.886
GATA4
M09117_2.00
Homo sapiens
NVWGATAAGR

YCTTATCWBN
Misc
Kulakovskiy et al.(2013)
GATA4_HUMAN.H11MO.0.A
0.855 0.886
Gata4
M09123_2.00
Mus musculus
NVWGATAAGR

YCTTATCWBN
Misc
Kulakovskiy et al.(2013)
GATA4_MOUSE.H11MO.0.A
0.855 0.886
Gata4
M09556_2.00
Mus musculus
NNWGATAASV

BSTTATCWNN
Misc
Heinz et al.(2010)
Heart-Gata4_GSE35151
0.855 0.886
GATA4
M10590_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA4_Q3
0.855 0.886
GATA4
M10591_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA4_Q5_01
0.855 0.886
GATA4
M04876_2.00
Homo sapiens
NWGATAASVN

NBSTTATCWN
SELEX
Yin et al.(2017)
GATA4_eDBD_Methyl-HT-SELEX
0.855 0.886
GATA5
M03065_2.00
Homo sapiens
HGATAAVV

BBTTATCD
SELEX
Jolma et al.(2013)
GATA5_1
0.855 0.857
GATA5
M04867_2.00
Homo sapiens
NHGATAASVN

NBSTTATCDN
SELEX
Yin et al.(2017)
GATA5_eDBD_HT-SELEX_1
0.855 0.857
GATA5
M04868_2.00
Homo sapiens
HGATAASRATCD

HGATYSTTATCD
SELEX
Yin et al.(2017)
GATA5_eDBD_HT-SELEX_2
0.855 0.857
GATA5
M04871_2.00
Homo sapiens
NWGATAASVN

NBSTTATCWN
SELEX
Yin et al.(2017)
GATA5_FL_HT-SELEX_1
0.855 0.857
GATA5
M04872_2.00
Homo sapiens
WGATAASRATCD

HGATYSTTATCW
SELEX
Yin et al.(2017)
GATA5_FL_HT-SELEX_2
0.855 0.857
GATA5
M04869_2.00
Homo sapiens
NWGATAASVN

NBSTTATCWN
SELEX
Yin et al.(2017)
GATA5_eDBD_Methyl-HT-SELEX_1
0.855 0.857
GATA5
M04870_2.00
Homo sapiens
WGATAAVRATCT

AGATYBTTATCW
SELEX
Yin et al.(2017)
GATA5_eDBD_Methyl-HT-SELEX_2
0.855 0.857
GATA5
M04873_2.00
Homo sapiens
NWGATAASRN

NYSTTATCWN
SELEX
Yin et al.(2017)
GATA5_FL_Methyl-HT-SELEX_1
0.855 0.857
GATA5
M04874_2.00
Homo sapiens
WGATAANRATCW

WGATYNTTATCW
SELEX
Yin et al.(2017)
GATA5_FL_Methyl-HT-SELEX_2
0.855 0.857
Gata5
M00167_2.00
Mus musculus
NNHGAWWNN

NNWWTCDNN
PBM
Badis et al.(2009)
Gata5_3768
0.853 0.857
Gata5
M10598_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA5_Q4
0.853 0.857
srp
M03759_2.00
Drosophila melanogaster
NHGATAAVV

BBTTATCDN
SELEX
Nitta et al.(2015)
srp_1
0.845 0.800
srp
M03760_2.00
Drosophila melanogaster
NHGATAABV

BVTTATCDN
SELEX
Nitta et al.(2015)
srp_2
0.845 0.800
srp
M06205_2.00
Drosophila melanogaster
VTCWABCSATAV

BTAWSGVTWGAB
B1H
Zhu et al.(2011)
srp_FlyReg_FBgn0003507
0.845 0.800
srp
M06206_2.00
Drosophila melanogaster
WGATAAGV

BCTTATCW
B1H
Zhu et al.(2011)
srp_SANGER_5_FBgn0003507
0.845 0.800
srp
M09670_2.00
Drosophila melanogaster
KHGATARBV

BVYTATCDM
Misc
Kulakovskiy et al.(2009)
srp
0.845 0.800
pnr
M03757_2.00
Drosophila melanogaster
NGATAAGATAASN

NSTTATCTTATCN
SELEX
Nitta et al.(2015)
pnr_1
0.843 0.814
pnr
M03758_2.00
Drosophila melanogaster
NHGATAASV

BSTTATCDN
SELEX
Nitta et al.(2015)
pnr_2
0.843 0.814
pnr
M06204_2.00
Drosophila melanogaster
BWGATAA

TTATCWV
B1H
Zhu et al.(2011)
pnr_SANGER_5_FBgn0003117
0.843 0.814
pnr
M08204_2.00
Drosophila melanogaster
ANHNNBHGATAASSDNNB

VNNHSSTTATCDVNNDNT
ChIP-seq
Contrino et al.(2012)
Mf28
0.843 0.814
pnr
M08418_2.00
Drosophila melanogaster
YATCGATWKBY

RVMWATCGATR
ChIP-chip
Mathelier et al.(2014)
MA0536.1
0.843 0.814
grn
M03754_2.00
Drosophila melanogaster
HGATAASV

BSTTATCD
SELEX
Nitta et al.(2015)
grn_1
0.842 0.829
grn
M03755_2.00
Drosophila melanogaster
NHGATAAGNNNCTTATCDN

NHGATAAGNNNCTTATCDN
SELEX
Nitta et al.(2015)
grn_2
0.842 0.829
grn
M03756_2.00
Drosophila melanogaster
NHGATAACNNNGTTATCDN

NHGATAACNNNGTTATCDN
SELEX
Nitta et al.(2015)
grn_3
0.842 0.829
GATA2
M04879_2.00
Homo sapiens
VHGATAHSV

BSDTATCDB
SELEX
Yin et al.(2017)
GATA2_eDBD_HT-SELEX
0.842 0.814
GATA2
M08125_2.00
Homo sapiens
NNAGATAAGNN

NNCTTATCTNN
ChIP-seq
Mathelier et al.(2014)
MA0036.3
0.842 0.814
GATA2
M07966_2.00
Homo sapiens
NVWGATAAVVN

NBBTTATCWBN
ChIP-seq
Gerstein et al.(2012)
HUVEC_GATA2_UCD
0.842 0.814
GATA2
M07967_2.00
Homo sapiens
BKNNNNNNNSWGATAASV

BSTTATCWSNNNNNNNMV
ChIP-seq
Gerstein et al.(2012)
K562b_GATA2_UCD
0.842 0.814
GATA2
M07968_2.00
Homo sapiens
NNKNNNNNNNVWGATAAV

BTTATCWBNNNNNNNMNN
ChIP-seq
Gerstein et al.(2012)
K562_GATA2_HudsonAlpha
0.842 0.814
GATA2
M07969_2.00
Homo sapiens
NVWGATAAVV

BBTTATCWBN
ChIP-seq
Gerstein et al.(2012)
K562_GATA2_UChicago
0.842 0.814
GATA2
M07970_2.00
Homo sapiens
VWGATARVVN

NBBYTATCWB
ChIP-seq
Gerstein et al.(2012)
SH-SY5Y_GATA2_UCD
0.842 0.814
GATA2
M09119_2.00
Homo sapiens
NKKNNNNNNDVAGATAASV

BSTTATCTBHNNNNNNMMN
Misc
Kulakovskiy et al.(2013)
GATA2_HUMAN.H11MO.0.A
0.842 0.814
Gata2
M09121_2.00
Mus musculus
DVAGATAASVN

NBSTTATCTBH
Misc
Kulakovskiy et al.(2013)
GATA2_MOUSE.H11MO.0.A
0.842 0.814
GATA2
M09550_2.00
Homo sapiens
VWGATAAGVN

NBCTTATCWB
Misc
Heinz et al.(2010)
K562-GATA2_GSE18829
0.842 0.814
GATA2
M10594_2.00
Homo sapiens
BVNGATRNBN

NVNYATCNBV
Transfac
Matys et al.(2006)
V$GATA2_01
0.842 0.814
GATA2
M10595_2.00
Homo sapiens
NNWGATAASR

YSTTATCWNN
Transfac
Matys et al.(2006)
V$GATA2_02
0.842 0.814
GATA2
M10596_2.00
Homo sapiens
HSAGATAWBA

TVWTATCWSD
Transfac
Matys et al.(2006)
V$GATA2_03
0.842 0.814
GATA2
M10597_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA2_Q5
0.842 0.814
GATA2
M04880_2.00
Homo sapiens
NHGATADSV

BSHTATCDN
SELEX
Yin et al.(2017)
GATA2_eDBD_Methyl-HT-SELEX
0.842 0.814
Gata3
M00166_2.00
Mus musculus
NNNHGATHNN

NNDATCDNNN
PBM
Badis et al.(2009)
Gata3_1024
0.842 0.800
GATA3
M03063_2.00
Homo sapiens
HGATARVV

BBYTATCD
SELEX
Jolma et al.(2013)
GATA3_1
0.842 0.800
GATA3
M03064_2.00
Homo sapiens
HGATAAVV

BBTTATCD
SELEX
Jolma et al.(2013)
GATA3_2
0.842 0.800
GATA3
M04863_2.00
Homo sapiens
HGATAASRATCW

WGATYSTTATCD
SELEX
Yin et al.(2017)
GATA3_FL_HT-SELEX_1
0.842 0.800
GATA3
M04864_2.00
Homo sapiens
HGATAASATCD

HGATSTTATCD
SELEX
Yin et al.(2017)
GATA3_FL_HT-SELEX_2
0.842 0.800
Gata3
M05867_2.00
Mus musculus
GATAAN

NTTATC
SMiLE-seq
Isakova et al.(2017)
GATA3
0.842 0.800
GATA3
M07965_2.00
Homo sapiens
NWGATWRNVATCWSN

NSWGATBNYWATCWN
ChIP-seq
Gerstein et al.(2012)
T-47D_GATA3_HudsonAlpha
0.842 0.800
GATA3
M09116_2.00
Homo sapiens
DVAGATAAVRD

HYBTTATCTBH
Misc
Kulakovskiy et al.(2013)
GATA3_HUMAN.H11MO.0.A
0.842 0.800
Gata3
M09122_2.00
Mus musculus
NVWGATAAVVDBH

DVHBBTTATCWBN
Misc
Kulakovskiy et al.(2013)
GATA3_MOUSE.H11MO.0.A
0.842 0.800
Gata3
M09551_2.00
Mus musculus
AGATBNNNAGATARV

BYTATCTNNNVATCT
Misc
Heinz et al.(2010)
iTreg-Gata3_GSE20898_1
0.842 0.800
Gata3
M09552_2.00
Mus musculus
AGATBDNNNNDSWGATWRNN

NNYWATCWSHNNNNHVATCT
Misc
Heinz et al.(2010)
iTreg-Gata3_GSE20898_2
0.842 0.800
Gata3
M09553_2.00
Mus musculus
NNNNNNWGATNDNATCWNNN

NNNWGATNHNATCWNNNNNN
Misc
Heinz et al.(2010)
iTreg-Gata3_GSE20898_3
0.842 0.800
Gata3
M09554_2.00
Mus musculus
NWGATNNNNATCWNN

NNWGATNNNNATCWN
Misc
Heinz et al.(2010)
iTreg-Gata3_GSE20898_4
0.842 0.800
Gata3
M09555_2.00
Mus musculus
WGATAAVV

BBTTATCW
Misc
Heinz et al.(2010)
iTreg-Gata3_GSE20898_5
0.842 0.800
GATA3
M10586_2.00
Homo sapiens
NNGATDRNR

YNYHATCNN
Transfac
Matys et al.(2006)
V$GATA3_01
0.842 0.800
GATA3
M10587_2.00
Homo sapiens
NRWGATAANA

TNTTATCWYN
Transfac
Matys et al.(2006)
V$GATA3_02
0.842 0.800
GATA3
M10588_2.00
Homo sapiens
ANWGATMWDA

THWKATCWNT
Transfac
Matys et al.(2006)
V$GATA3_03
0.842 0.800
GATA3
M10589_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA3_Q4
0.842 0.800
GATA3
M04865_2.00
Homo sapiens
WGATAASGATCW

WGATCSTTATCW
SELEX
Yin et al.(2017)
GATA3_FL_Methyl-HT-SELEX_1
0.842 0.800
GATA3
M04866_2.00
Homo sapiens
WGATAASATCW

WGATSTTATCW
SELEX
Yin et al.(2017)
GATA3_FL_Methyl-HT-SELEX_2
0.842 0.800
Gata1
M08127_2.00
Mus musculus
RNAGATAAGRV

BYCTTATCTNY
ChIP-seq
Mathelier et al.(2014)
MA0035.3
0.842 0.786
Gata1
M09124_2.00
Mus musculus
BKBNNNNNNVWGATAAVVV

BBBTTATCWBNNNNNNVMV
Misc
Kulakovskiy et al.(2013)
GATA1_MOUSE.H11MO.0.A
0.842 0.786
GATA1
M02738_2.00
Homo sapiens
GATWASMH

DKSTWATC
SELEX
Jolma et al.(2010)
GATA1_dimer
0.842 0.771
GATA1
M02739_2.00
Homo sapiens
HGATAA

TTATCD
SELEX
Jolma et al.(2010)
GATA1_monomer
0.842 0.771
GATA1
M04861_2.00
Homo sapiens
GATAAKDNHMTTATC

GATAAKDNHMTTATC
SELEX
Yin et al.(2017)
GATA1_eDBD_HT-SELEX
0.842 0.771
GATA1
M07963_2.00
Homo sapiens
NSWGATAASVN

NBSTTATCWSN
ChIP-seq
Gerstein et al.(2012)
K562b_GATA1_UCD
0.842 0.771
GATA1
M07964_2.00
Homo sapiens
NNKNNNNNNNSWGATAAV

BTTATCWSNNNNNNNMNN
ChIP-seq
Gerstein et al.(2012)
PBDE_GATA1_UCD
0.842 0.771
GATA1
M08202_2.00
Homo sapiens
NBKBNNNNNNSWGATAASVN

NBSTTATCWSNNNNNNVMVN
ChIP-seq
Contrino et al.(2012)
Mv73
0.842 0.771
GATA1
M08203_2.00
Homo sapiens
WGATNNNATC

GATNNNATCW
ChIP-seq
Contrino et al.(2012)
Mv75
0.842 0.771
GATA1
M09115_2.00
Homo sapiens
NBKBNNNNNNVWGATAAVV

BBTTATCWBNNNNNNVMVN
Misc
Kulakovskiy et al.(2013)
GATA1_HUMAN.H11MO.0.A
0.842 0.771
GATA1
M09549_2.00
Homo sapiens
SWGATAAGVV

BBCTTATCWS
Misc
Heinz et al.(2010)
K562-GATA1_GSE18829
0.842 0.771
GATA1
M10577_2.00
Homo sapiens
SVNGATDBBN

NVVHATCNBS
Transfac
Matys et al.(2006)
V$GATA1_01
0.842 0.771
GATA1
M10578_2.00
Homo sapiens
NHVNHGATAVKVBN

NVBMBTATCDNBDN
Transfac
Matys et al.(2006)
V$GATA1_02
0.842 0.771
GATA1
M10579_2.00
Homo sapiens
RNSNDGATTRBNRN

NYNVYAATCHNSNY
Transfac
Matys et al.(2006)
V$GATA1_03
0.842 0.771
GATA1
M10580_2.00
Homo sapiens
DNVWGATARVNVN

NBNBYTATCWBNH
Transfac
Matys et al.(2006)
V$GATA1_04
0.842 0.771
GATA1
M10581_2.00
Homo sapiens
VMHGATAAVM

KBTTATCDKB
Transfac
Matys et al.(2006)
V$GATA1_05
0.842 0.771
GATA1
M10582_2.00
Homo sapiens
MNAGATAAVR

YBTTATCTNK
Transfac
Matys et al.(2006)
V$GATA1_06
0.842 0.771
GATA1
M10583_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA1_10
0.842 0.771
GATA1
M10584_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA1_Q6
0.842 0.771
GATA1
M04862_2.00
Homo sapiens
GATAABNNNVTTATC

GATAABNNNVTTATC
SELEX
Yin et al.(2017)
GATA1_eDBD_Methyl-HT-SELEX
0.842 0.771
elt-1
M08206_2.00
Caenorhabditis elegans
GATWDNVATCT

AGATBNHWATC
ChIP-seq
Contrino et al.(2012)
Mw144
0.839 0.771
elt-1
M08207_2.00
Caenorhabditis elegans
TGATAASR

YSTTATCA
ChIP-seq
Contrino et al.(2012)
Mw145
0.839 0.771
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10009165 GATA 315 349
Cmyd_10009165 GATA 369 403

Links

Other GATA family TFs
Other Chelonia mydas TFs

566 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
27914.m000423 Ricinus communis 27914.m000423 N 0.000
AT3G59470 Arabidopsis thaliana AT3G59470 N 0.000
Bo6g076470 Brassica oleracea Bo6g076470 N 0.000
Bo8g093280 Brassica oleracea Bo8g093280 N 0.000
Bostr.20903s0171 Boechera stricta Bostr.20903s0171 N 0.000
Bra003377 Brassica rapa Bra003377 N 0.000
Cagra.5954s0021 Capsella grandiflora Cagra.5954s0021 N 0.000
Carubv10017836m.g Capsella rubella Carubv10017836m.g N 0.000
cassava30288.valid.m1 Manihot esculenta cassava30288.valid.m1 N 0.000
cassava38728.m1 Manihot esculenta cassava38728.m1 N 0.000
Ca_02686 Cicer arietinum Ca_02686 N 0.000
Cla010925 Citrullus lanatus Cla010925 N 0.000
Cucsa.094440 Cucumis sativus Cucsa.094440 N 0.000
evm.TU.supercontig_195.42 Carica papaya evm.TU.supercontig_195.42 N 0.000
gene21527-v1.0-hybrid Fragaria vesca gene21527-v1.0-hybrid N 0.000
gene21669-v1.0-hybrid Fragaria vesca gene21669-v1.0-hybrid N 0.000
GLYMA11G13610 Glycine max GLYMA11G13610 N 0.000
GLYMA12G05600 Glycine max GLYMA12G05600 N 0.000
GLYMA15G03440 Glycine max GLYMA15G03440 N 0.000
Gorai.005G016700 Gossypium raimondii Gorai.005G016700 N 0.000
Gorai.005G126700 Gossypium raimondii Gorai.005G126700 N 0.000
MDP0000348552 Malus domestica MDP0000348552 N 0.000
MDP0000618200 Malus domestica MDP0000618200 N 0.000
mgf020729m Mimulus guttatus mgf020729m N 0.000
MTR_2g098920 Medicago truncatula MTR_2g098920 N 0.000
MTR_4g067290 Medicago truncatula MTR_4g067290 N 0.000
orange1.1g025532m.g Citrus sinensis orange1.1g025532m.g N 0.000
PGSC0003DMG402027016 Solanum tuberosum PGSC0003DMG402027016 N 0.000
PK13380.1 Cannabis sativa PK13380.1 N 0.000
POPTR_0007s01870 Populus trichocarpa POPTR_0007s01870 N 0.000
POPTR_0017s05780 Populus trichocarpa POPTR_0017s05780 N 0.000
PRUPE_ppa011567mg Prunus persica PRUPE_ppa011567mg N 0.000
SapurV1A.0834s0190 Salix purpurea SapurV1A.0834s0190 N 0.000
SapurV1A.1078s0040 Salix purpurea SapurV1A.1078s0040 N 0.000
SapurV1A.4098s0020 Salix purpurea SapurV1A.4098s0020 N 0.000
scaffold_503155.1 Arabidopsis lyrata scaffold_503155.1 N 0.000
Solyc06g073200.2 Solanum lycopersicum Solyc06g073200.2 N 0.000
TCM_020020 Theobroma cacao TCM_020020 N 0.000
Thhalv10006173m.g Eutrema salsugineum Thhalv10006173m.g N 0.000
VIT_05s0102g00690 Vitis vinifera VIT_05s0102g00690 N 0.000