Pm022163 (Prunus mume)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pm022163 T195963_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA28
M01996_2.00
Arabidopsis thaliana
NNGATNN

NNATCNN
PBM
Weirauch et al.(2014)
pTH7505
0.848 0.833
GATA28
M06883_2.00
Arabidopsis thaliana
GATGATGATGATGATGATG

CATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
ZML2_col_a
0.848 0.833
GATA24
M01941_2.00
Arabidopsis thaliana
HGATBNN

NNVATCD
PBM
Weirauch et al.(2014)
pTH7661
0.837 0.833
OS06G0698900
M02015_2.00
Oryza sativa
NNNNAHBNN

NNVDTNNNN
PBM
Weirauch et al.(2014)
pTH8641
0.837 0.833
ZIM
M06892_2.00
Arabidopsis thaliana
AWYSRACGGYYVWGA

TCWBRRCCGTYSRWT
Dap-seq
OMalley et al.(2016)
ZIM_col_a
0.815 0.861
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm022163 GATA 175 212

Links

Other GATA family TFs
Other Prunus mume TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GATA24 Arabidopsis thaliana AT3G21175 D 0.837
OS06G0698900 Oryza sativa OS06G0698900 D 0.837
ZIM Arabidopsis thaliana AT4G24470 D 0.815
GATA28 Arabidopsis thaliana AT1G51600 D 0.848
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I 0.848
Ca_17522 Cicer arietinum Ca_17522 I 0.842
Cla013127 Citrullus lanatus Cla013127 I 0.861
Cla015736 Citrullus lanatus Cla015736 I 0.840
Pm013048 Prunus mume Pm013048 I 0.837
29838.m001724 Ricinus communis 29838.m001724 I 0.867
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I 0.862
Cucsa.218190 Cucumis sativus Cucsa.218190 I 0.862
Cucsa.359570 Cucumis sativus Cucsa.359570 I 0.842
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I 0.848
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I 0.848
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I 0.862
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I 0.842
TRIUR3_32095 Triticum urartu TRIUR3_32095 I 0.842
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I 0.832
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I 0.832
Si006750m.g Setaria italica Si006750m.g I 0.837
TCM_007360 Theobroma cacao TCM_007360 I 0.856
TCM_027858 Theobroma cacao TCM_027858 I 0.842
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I 0.842
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I 0.842
Ca_01471 Cicer arietinum Ca_01471 I 0.810
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I 0.842
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I 0.832
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I 0.832
TRIUR3_11107 Triticum urartu TRIUR3_11107 I 0.832
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I 0.848
mgf016112m Mimulus guttatus mgf016112m I 0.851
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I 0.867
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I 0.842
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I 0.837
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I 0.837
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I 0.842
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I 0.856
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I 0.837
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I 0.842
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I 0.815
PK11000.1 Cannabis sativa PK11000.1 I 0.831
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I 0.809
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I 0.842
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I 0.840
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I 0.842
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I 0.852
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I 0.848
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I 0.842
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I 0.837
Bostr.7867s0254 Boechera stricta Bostr.7867s0254 I 0.815
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I 0.837
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I 0.815
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I 0.842
Carubv10006355m.g Capsella rubella Carubv10006355m.g I 0.815
Carubv10009866m.g Capsella rubella Carubv10009866m.g I 0.842
Carubv10016131m.g Capsella rubella Carubv10016131m.g I 0.837
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I 0.842
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I 0.837
BGIOSGA007539 Oryza indica BGIOSGA007539 I 0.842
GLYMA08G23720 Glycine max GLYMA08G23720 I 0.842
GRMZM2G058479 Zea mays GRMZM2G058479 I 0.832
GRMZM2G080509 Zea mays GRMZM2G080509 I 0.837
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I 0.842
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I 0.837
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I 0.837
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I 0.842
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I 0.842
LPERR02G03330 Leersia perrieri LPERR02G03330 I 0.842
LPERR06G21800 Leersia perrieri LPERR06G21800 I 0.842
LPERR11G14110 Leersia perrieri LPERR11G14110 I 0.840
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I 0.815
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I 0.842
F775_08559 Aegilops tauschii F775_08559 I 0.842
BGIOSGA020596 Oryza indica BGIOSGA020596 I 0.836
Bo1g039000 Brassica oleracea Bo1g039000 I 0.815
Bo1g108240 Brassica oleracea Bo1g108240 I 0.837
Bo3g181450 Brassica oleracea Bo3g181450 I 0.837
Bo5g103560 Brassica oleracea Bo5g103560 I 0.837
Bra013805 Brassica rapa Bra013805 I 0.815
Bra014292 Brassica rapa Bra014292 I 0.836
Bra023900 Brassica rapa Bra023900 I 0.837
Bra031258 Brassica rapa Bra031258 I 0.837
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I 0.837
BRADI3G03800 Brachypodium distachyon BRADI3G03800 I 0.823
MLOC_17061 Hordeum vulgare MLOC_17061 I 0.832
MLOC_3107 Hordeum vulgare MLOC_3107 I 0.842
MTR_3g100050 Medicago truncatula MTR_3g100050 I 0.815
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I 0.842
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I 0.837
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I 0.842
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I 0.837
GATA17 Oryza sativa OS02G0148500 I 0.842
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I 0.856
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I 0.842
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I 0.856
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I 0.867
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I 0.837
Sb10g028750 Sorghum bicolor Sb10g028750 I 0.832
OPUNC06G23830 Oryza punctata OPUNC06G23830 I 0.837
OPUNC02G02970 Oryza punctata OPUNC02G02970 I 0.837
ONIVA06G28780 Oryza nivara ONIVA06G28780 I 0.837
MTR_4g008070 Medicago truncatula MTR_4g008070 I 0.810
OB02G13220 Oryza brachyantha OB02G13220 I 0.837
OB06G33840 Oryza brachyantha OB06G33840 I 0.842
OBART02G03780 Oryza barthii OBART02G03780 I 0.842
OBART06G26250 Oryza barthii OBART06G26250 I 0.837
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I 0.842
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I 0.837
OLONG_015069 Oryza longistaminata OLONG_015069 I 0.837
OMERI02G04610 Oryza meridionalis OMERI02G04610 I 0.842
OMERI06G26410 Oryza meridionalis OMERI06G26410 I 0.836
ONIVA02G03810 Oryza nivara ONIVA02G03810 I 0.842
ZML2 Arabidopsis lyrata scaffold_104929.1 I 0.848