cassava15588.m1 (Manihot esculenta)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 cassava15588.m1 T196007_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.838 0.833
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.818 0.833
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.818 0.833
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava15588.m1 GATA 17 52

Links

Other GATA family TFs
Other Manihot esculenta TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.867
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.867
TCM_026732 Theobroma cacao TCM_026732 I 0.867
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.867
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.867
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.867
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.867
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.867
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.865
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.856
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.856
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.856
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.856
OS03G0831200 Oryza sativa OS03G0831200 I 0.856
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.856
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.856
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.856
OBART03G39750 Oryza barthii OBART03G39750 I 0.856
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.856
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.856
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.856
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.856
PK18820.1 Cannabis sativa PK18820.1 I 0.853
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.853
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.853
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.853
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.853
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.853
Cla009422 Citrullus lanatus Cla009422 I 0.853
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.853
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.853
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.852
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.852
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.852
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.852
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.852
TCM_004753 Theobroma cacao TCM_004753 I 0.852
29889.m003248 Ricinus communis 29889.m003248 I 0.852
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.852
PK21934.1 Cannabis sativa PK21934.1 I 0.851
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.848
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.848
mgf003937m Mimulus guttatus mgf003937m I 0.848
Cla022104 Citrullus lanatus Cla022104 I 0.848
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.848
TCM_021303 Theobroma cacao TCM_021303 I 0.848
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.848
Pm008287 Prunus mume Pm008287 I 0.848
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.848
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.848
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.848
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.848
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.848
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.848
Bo00847s050 Brassica oleracea Bo00847s050 I 0.848
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.848
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.848
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.848
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.847
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.847
MDP0000309902 Malus domestica MDP0000309902 I 0.847
Ca_02992 Cicer arietinum Ca_02992 I 0.847
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.847
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.847
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.847
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.847
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.847
mgf022078m Mimulus guttatus mgf022078m I 0.842
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.840
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.839
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.839
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.839
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.839
GATA16 Arabidopsis thaliana AT5G49300 D 0.838
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.834
Bra021209 Brassica rapa Bra021209 I 0.834
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.834
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.834
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.834
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.834
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.834
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.834
GATA17 Arabidopsis thaliana AT3G16870 I 0.834
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.834
Bo3g068560 Brassica oleracea Bo3g068560 I 0.834
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.834
Bo1g055120 Brassica oleracea Bo1g055120 I 0.834
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.834
Bo1g122970 Brassica oleracea Bo1g122970 I 0.834
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.834
Bra012742 Brassica rapa Bra012742 I 0.834
Bra022184 Brassica rapa Bra022184 I 0.834
Bo7g104200 Brassica oleracea Bo7g104200 I 0.834
Bra033533 Brassica rapa Bra033533 I 0.834
Bo5g123610 Brassica oleracea Bo5g123610 I 0.833
OLONG_011157 Oryza longistaminata OLONG_011157 I 0.829
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I 0.829
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I 0.829
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I 0.829
BGIOSGA000005 Oryza indica BGIOSGA000005 I 0.829
Sb03g047520 Sorghum bicolor Sb03g047520 I 0.829
OB01G55040 Oryza brachyantha OB01G55040 I 0.829
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I 0.829
Si002983m.g Setaria italica Si002983m.g I 0.829
LPERR04G11580 Leersia perrieri LPERR04G11580 I 0.829
OBART01G45830 Oryza barthii OBART01G45830 I 0.829
ONIVA01G52080 Oryza nivara ONIVA01G52080 I 0.829
OS01G0976800 Oryza sativa OS01G0976800 I 0.829
MLOC_54886 Hordeum vulgare MLOC_54886 I 0.829
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I 0.829
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I 0.829
TRIUR3_03165 Triticum urartu TRIUR3_03165 I 0.829
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I 0.829
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.828
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N 0.826
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.826
PGSC0003DMG400024783 Solanum tuberosum PGSC0003DMG400024783 I 0.826
Pavir.J03766 Panicum virgatum Pavir.J03766 I 0.825
Si037892m.g Setaria italica Si037892m.g I 0.825
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.825
Pavir.J12379 Panicum virgatum Pavir.J12379 I 0.825
30128.m008883 Ricinus communis 30128.m008883 N 0.825
GRMZM2G114775 Zea mays GRMZM2G114775 I 0.825
Pm003128 Prunus mume Pm003128 I 0.825
F775_43556 Aegilops tauschii F775_43556 I 0.825
Sb01g002270 Sorghum bicolor Sb01g002270 I 0.825
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.825
Bra020650 Brassica rapa Bra020650 I 0.822
GATA15 Arabidopsis thaliana AT3G06740 D 0.818
Bra037421 Brassica rapa Bra037421 I 0.818
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.818
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.818
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.818
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.818
Carubv10014841m.g Capsella rubella Carubv10014841m.g I 0.818
Bo7g092660 Brassica oleracea Bo7g092660 I 0.818
Gorai.013G206400 Gossypium raimondii Gorai.013G206400 N 0.815
GSMUA_Achr8G33850_001 Musa acuminata GSMUA_Achr8G33850_001 N 0.815
GSMUA_Achr1G14780_001 Musa acuminata GSMUA_Achr1G14780_001 N 0.814
Aquca_003_00608 Aquilegia coerulea Aquca_003_00608 N 0.812
GSMUA_Achr7G03800_001 Musa acuminata GSMUA_Achr7G03800_001 N 0.809
AMTR_s00025p00250380 Amborella trichopoda AMTR_s00025p00250380 N 0.809
Lus10029863.g Linum usitatissimum Lus10029863.g N 0.808
Lus10020684.g Linum usitatissimum Lus10020684.g N 0.808
Bo1g147740 Brassica oleracea Bo1g147740 I 0.806
Bra040288 Brassica rapa Bra040288 I 0.806
Gorai.002G029400 Gossypium raimondii Gorai.002G029400 I 0.803