CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh2_pg.C_20147
(
Neurospora discreta
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
estExt_fgenesh2_pg.C_20147
T196119_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nit-2
M02017_2.00
Neurospora crassa
NNGATHNN
NNDATCNN
PBM
Weirauch et al.(2014)
pTH8624
0.867
1.000
nit-2
M10601_2.00
Neurospora crassa
DHGATA
TATCDH
Transfac
Matys et al.(2006)
F$NIT2_01
0.867
1.000
GATAe
M03761_2.00
Drosophila melanogaster
VHGATAAS
STTATCDB
SELEX
Nitta et al.(2015)
GATAe_1
0.822
0.600
GATAe
M03762_2.00
Drosophila melanogaster
HGATAACNNNGTTATCD
HGATAACNNNGTTATCD
SELEX
Nitta et al.(2015)
GATAe_2
0.822
0.600
GATAe
M03763_2.00
Drosophila melanogaster
HGATAAGNNNCTTATCD
HGATAAGNNNCTTATCD
SELEX
Nitta et al.(2015)
GATAe_3
0.822
0.600
GATAe
M06208_2.00
Drosophila melanogaster
WGATAAG
CTTATCW
B1H
Zhu et al.(2011)
GATAe_SANGER_5_FBgn0038391
0.822
0.600
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_20147
GATA
731
765
CTNCFTQTTPLWRRNPDGQPLCNACGLFLKLHGVV
Links
Other
GATA
family TFs
Other
Neurospora discreta
TFs
436 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy