CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw1.32.153.1
(
Physcomitrella patens
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
gw1.32.153.1
T196297_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA9
M02002_2.00
Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN
PBM
Weirauch et al.(2014)
pTH7378
0.827
0.962
GATA12
M00863_2.00
Arabidopsis thaliana
NNNGATBN
NVATCNNN
PBM
Franco-Zorrilla et al.(2014)
GATA12
0.827
0.962
GATA12
M06895_2.00
Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH
Dap-seq
OMalley et al.(2016)
GATA12_col_a
0.827
0.962
GATA12
M06896_2.00
Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR
Dap-seq
OMalley et al.(2016)
GATA12_colamp_a
0.827
0.962
GATA4
M00727_2.00
Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN
PBM
Chang et al.(2013)
pTH7196
0.816
0.923
GATA4
M06891_2.00
Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND
Dap-seq
OMalley et al.(2016)
GATA4_col_a
0.816
0.923
GATA8
M02000_2.00
Arabidopsis thaliana
NNGATYYVN
NBRRATCNN
PBM
Weirauch et al.(2014)
pTH7665
0.812
0.923
Q76DY3_TOBAC
M10600_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGP1_01
0.812
0.923
GATA3
M02003_2.00
Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN
PBM
Weirauch et al.(2014)
pTH7657
0.802
0.885
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.32.153.1
GATA
1
26
QWRTGPMGPKTLCNACGVRYKSGRLL
Links
Other
GATA
family TFs
Other
Physcomitrella patens
TFs
347 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy