CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Aquca_007_00224
(
Aquilegia coerulea
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
Aquca_007_00224
T196363_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA19
M06893_2.00
Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV
Dap-seq
OMalley et al.(2016)
GATA19_col_a
0.853
0.972
GATA19
M06894_2.00
Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND
Dap-seq
OMalley et al.(2016)
GATA19_colamp_a
0.853
0.972
GATA20
M06884_2.00
Arabidopsis thaliana
GATCBGAT
ATCVGATC
Dap-seq
OMalley et al.(2016)
GATA20_col_a
0.812
0.917
GATA20
M06885_2.00
Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND
Dap-seq
OMalley et al.(2016)
GATA20_colamp_a
0.812
0.917
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_007_00224.1
GATA
133
168
CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERR
Links
Other
GATA
family TFs
Other
Aquilegia coerulea
TFs
132 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy