Bostr.7867s0254 (Boechera stricta)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Bostr.7867s0254 T196409_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ZIM
M06892_2.00
Arabidopsis thaliana
AWYSRACGGYYVWGA

TCWBRRCCGTYSRWT
Dap-seq
OMalley et al.(2016)
ZIM_col_a
0.867 1.000
GATA24
M01941_2.00
Arabidopsis thaliana
HGATBNN

NNVATCD
PBM
Weirauch et al.(2014)
pTH7661
0.810 0.833
OS06G0698900
M02015_2.00
Oryza sativa
NNNNAHBNN

NNVDTNNNN
PBM
Weirauch et al.(2014)
pTH8641
0.810 0.806
GATA28
M01996_2.00
Arabidopsis thaliana
NNGATNN

NNATCNN
PBM
Weirauch et al.(2014)
pTH7505
0.810 0.778
GATA28
M06883_2.00
Arabidopsis thaliana
GATGATGATGATGATGATG

CATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
ZML2_col_a
0.810 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.7867s0254.1.p GATA 217 254

Links

Other GATA family TFs
Other Boechera stricta TFs

Invalid Input OrderBy

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action