Carubv10014841m.g (Capsella rubella)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Carubv10014841m.g T196459_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.867 1.000
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.867 1.000
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.825 0.917
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014841m GATA 39 74

Links

Other GATA family TFs
Other Capsella rubella TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GATA15 Arabidopsis thaliana AT3G06740 D 0.867
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.867
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.867
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.867
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.867
Bo1g147740 Brassica oleracea Bo1g147740 I 0.855
Bra040288 Brassica rapa Bra040288 I 0.855
Bo7g092660 Brassica oleracea Bo7g092660 I 0.836
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.836
Bra037421 Brassica rapa Bra037421 I 0.836
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.836
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.836
Bo00847s050 Brassica oleracea Bo00847s050 I 0.836
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.836
GATA16 Arabidopsis thaliana AT5G49300 D 0.825
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.822
Pm008287 Prunus mume Pm008287 I 0.822
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.822
Cla022104 Citrullus lanatus Cla022104 I 0.822
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.822
mgf003937m Mimulus guttatus mgf003937m I 0.822
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.822
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.822
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.822
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.822
TCM_021303 Theobroma cacao TCM_021303 I 0.822
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.822
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.822
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.821
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.821
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.821
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.821
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.821
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.821
Ca_02992 Cicer arietinum Ca_02992 I 0.821
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.818
Cla009422 Citrullus lanatus Cla009422 I 0.818
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.818
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.818
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.818
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.818
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.818
PK18820.1 Cannabis sativa PK18820.1 I 0.818
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.818
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.818
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.818
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.818
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.818
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.818
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.818
TCM_026732 Theobroma cacao TCM_026732 I 0.818
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.818
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.818
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.816
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.816
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.816
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.816
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.816
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.816
29889.m003248 Ricinus communis 29889.m003248 I 0.816
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.816
TCM_004753 Theobroma cacao TCM_004753 I 0.816
GSMUA_Achr2G16730_001 Musa acuminata GSMUA_Achr2G16730_001 I 0.811
Bra020650 Brassica rapa Bra020650 I 0.809
Bra012742 Brassica rapa Bra012742 I 0.808
Gorai.002G029400 Gossypium raimondii Gorai.002G029400 I 0.808
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.808
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.808
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.808
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.808
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.808
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.807
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.807
Si037892m.g Setaria italica Si037892m.g I 0.807
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.807
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.807
Pavir.J12379 Panicum virgatum Pavir.J12379 I 0.807
Pavir.J03766 Panicum virgatum Pavir.J03766 I 0.807
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.807
Sb01g002270 Sorghum bicolor Sb01g002270 I 0.807
F775_43556 Aegilops tauschii F775_43556 I 0.807
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.807
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.807
OBART03G39750 Oryza barthii OBART03G39750 I 0.807
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.807
OS03G0831200 Oryza sativa OS03G0831200 I 0.807
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.807
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.807
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.807
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.807
GRMZM2G114775 Zea mays GRMZM2G114775 I 0.807
Bo1g055120 Brassica oleracea Bo1g055120 I 0.803
Bo1g122970 Brassica oleracea Bo1g122970 I 0.803
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.803
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.803
GATA17 Arabidopsis thaliana AT3G16870 I 0.803
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.803
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.803
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.803
Bo3g068560 Brassica oleracea Bo3g068560 I 0.803
Bra022184 Brassica rapa Bra022184 I 0.803
Bra021209 Brassica rapa Bra021209 I 0.803
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.803
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.803
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.803
Bra033533 Brassica rapa Bra033533 I 0.803
Bo7g104200 Brassica oleracea Bo7g104200 I 0.803
PK21934.1 Cannabis sativa PK21934.1 I 0.802
Bo5g123610 Brassica oleracea Bo5g123610 I 0.802