Carubv10027332m.g (Capsella rubella)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Carubv10027332m.g T196473_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG

CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.856 0.943
GATA15
M01997_2.00
Arabidopsis thaliana
NNHGATCNN

NNGATCDNN
PBM
Weirauch et al.(2014)
pTH7662
0.836 0.943
GATA15
M06886_2.00
Arabidopsis thaliana
GATGATGATGATGATGATS

SATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
GATA15_col_b
0.836 0.943
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10027332m GATA 34 68

Links

Other GATA family TFs
Other Capsella rubella TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GATA15 Arabidopsis thaliana AT3G06740 D 0.836
GATA16 Arabidopsis thaliana AT5G49300 D 0.856
TCM_004753 Theobroma cacao TCM_004753 I 0.847
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.867
mgf022078m Mimulus guttatus mgf022078m I 0.823
mgf003937m Mimulus guttatus mgf003937m I 0.853
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.853
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.848
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.853
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.836
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.834
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.839
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.839
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.836
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.834
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.839
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.834
Carubv10014841m.g Capsella rubella Carubv10014841m.g I 0.836
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.847
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.848
TCM_021303 Theobroma cacao TCM_021303 I 0.853
TCM_026732 Theobroma cacao TCM_026732 I 0.848
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I 0.811
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I 0.811
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.807
TRIUR3_03165 Triticum urartu TRIUR3_03165 I 0.811
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.848
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.822
Ca_02992 Cicer arietinum Ca_02992 I 0.852
Cla009422 Citrullus lanatus Cla009422 I 0.848
Cla022104 Citrullus lanatus Cla022104 I 0.853
Pm003128 Prunus mume Pm003128 I 0.821
Pm008287 Prunus mume Pm008287 I 0.853
29889.m003248 Ricinus communis 29889.m003248 I 0.847
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.848
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.847
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.848
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.848
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.821
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I 0.811
Pavir.J03766 Panicum virgatum Pavir.J03766 I 0.807
Pavir.J12379 Panicum virgatum Pavir.J12379 I 0.807
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.848
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.848
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.852
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.852
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.867
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.834
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.836
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.834
PK18820.1 Cannabis sativa PK18820.1 I 0.848
PK21934.1 Cannabis sativa PK21934.1 I 0.833
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.847
MDP0000309902 Malus domestica MDP0000309902 I 0.828
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.821
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.853
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.848
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.848
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.848
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.853
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.853
Gorai.002G029400 Gossypium raimondii Gorai.002G029400 I 0.808
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.853
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.847
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.847
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.848
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.853
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.828
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.853
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.852
MLOC_54886 Hordeum vulgare MLOC_54886 I 0.811
Bra033533 Brassica rapa Bra033533 I 0.834
Bra037421 Brassica rapa Bra037421 I 0.836
Bra040288 Brassica rapa Bra040288 I 0.824
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.838
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I 0.811
F775_43556 Aegilops tauschii F775_43556 I 0.807
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.839
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.834
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.836
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.847
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.847
GRMZM2G114775 Zea mays GRMZM2G114775 I 0.807
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.838
LPERR04G11580 Leersia perrieri LPERR04G11580 I 0.811
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.852
Bra022184 Brassica rapa Bra022184 I 0.834
Bra021209 Brassica rapa Bra021209 I 0.834
GATA17 Arabidopsis thaliana AT3G16870 I 0.834
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.839
BGIOSGA000005 Oryza indica BGIOSGA000005 I 0.811
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.838
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.838
Bo00847s050 Brassica oleracea Bo00847s050 I 0.867
Bo1g055120 Brassica oleracea Bo1g055120 I 0.834
Bo1g122970 Brassica oleracea Bo1g122970 I 0.834
Bo1g147740 Brassica oleracea Bo1g147740 I 0.824
Bo3g068560 Brassica oleracea Bo3g068560 I 0.834
Bo5g123610 Brassica oleracea Bo5g123610 I 0.833
Bo7g092660 Brassica oleracea Bo7g092660 I 0.836
Bo7g104200 Brassica oleracea Bo7g104200 I 0.834
Bra012742 Brassica rapa Bra012742 I 0.839
Bra020650 Brassica rapa Bra020650 I 0.840
OB01G55040 Oryza brachyantha OB01G55040 I 0.811
OBART01G45830 Oryza barthii OBART01G45830 I 0.811
OBART03G39750 Oryza barthii OBART03G39750 I 0.838
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.828
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.848
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.834
PGSC0003DMG400024783 Solanum tuberosum PGSC0003DMG400024783 I 0.808
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.848
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.852
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.852
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.853
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.821
Sb01g002270 Sorghum bicolor Sb01g002270 I 0.807
Sb03g047520 Sorghum bicolor Sb03g047520 I 0.811
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.867
Si002983m.g Setaria italica Si002983m.g I 0.811
Si037892m.g Setaria italica Si037892m.g I 0.807
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.808
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.834
OS03G0831200 Oryza sativa OS03G0831200 I 0.838
OS01G0976800 Oryza sativa OS01G0976800 I 0.811
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I 0.811
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.838
OLONG_011157 Oryza longistaminata OLONG_011157 I 0.811
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.838
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.838
ONIVA01G52080 Oryza nivara ONIVA01G52080 I 0.811
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.838
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.838
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.848
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.838
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I 0.811
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I 0.811
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.838
Lus10029863.g Linum usitatissimum Lus10029863.g N 0.812
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N 0.808
Lus10020684.g Linum usitatissimum Lus10020684.g N 0.812
30128.m008883 Ricinus communis 30128.m008883 N 0.807
Aquca_003_00608 Aquilegia coerulea Aquca_003_00608 N 0.808