Ciclev10003698m.g (Citrus clementina)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Ciclev10003698m.g T196477_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG

CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.836 0.806
GATA15
M01997_2.00
Arabidopsis thaliana
NNHGATCNN

NNGATCDNN
PBM
Weirauch et al.(2014)
pTH7662
0.816 0.806
GATA15
M06886_2.00
Arabidopsis thaliana
GATGATGATGATGATGATS

SATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
GATA15_col_b
0.816 0.806
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10003698m GATA 11 46

Links

Other GATA family TFs
Other Citrus clementina TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.867
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.853
29889.m003248 Ricinus communis 29889.m003248 I 0.853
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.853
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.853
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.853
TCM_004753 Theobroma cacao TCM_004753 I 0.853
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.852
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.852
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.852
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.852
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.852
TCM_026732 Theobroma cacao TCM_026732 I 0.852
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.852
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.852
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.852
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.852
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.852
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.852
PK18820.1 Cannabis sativa PK18820.1 I 0.852
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.852
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.852
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.852
Cla009422 Citrullus lanatus Cla009422 I 0.852
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.852
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.852
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.848
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.848
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.848
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.848
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.848
Ca_02992 Cicer arietinum Ca_02992 I 0.848
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.848
Bo00847s050 Brassica oleracea Bo00847s050 I 0.847
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.847
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.847
mgf003937m Mimulus guttatus mgf003937m I 0.847
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.847
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.847
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.847
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.847
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.847
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.847
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.847
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.847
TCM_021303 Theobroma cacao TCM_021303 I 0.847
Pm008287 Prunus mume Pm008287 I 0.847
Cla022104 Citrullus lanatus Cla022104 I 0.847
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.847
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.847
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.847
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.841
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.841
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.841
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.841
OS03G0831200 Oryza sativa OS03G0831200 I 0.841
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.841
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.841
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.841
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.841
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.841
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.841
OBART03G39750 Oryza barthii OBART03G39750 I 0.841
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.841
PK21934.1 Cannabis sativa PK21934.1 I 0.838
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.837
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.837
GATA16 Arabidopsis thaliana AT5G49300 D 0.836
Bo5g123610 Brassica oleracea Bo5g123610 I 0.833
Bo3g068560 Brassica oleracea Bo3g068560 I 0.833
Bo7g104200 Brassica oleracea Bo7g104200 I 0.833
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.833
Bra021209 Brassica rapa Bra021209 I 0.833
Bra012742 Brassica rapa Bra012742 I 0.833
Bo1g122970 Brassica oleracea Bo1g122970 I 0.833
Bo1g055120 Brassica oleracea Bo1g055120 I 0.833
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.833
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.833
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.833
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.833
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.833
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.833
Bra022184 Brassica rapa Bra022184 I 0.833
GATA17 Arabidopsis thaliana AT3G16870 I 0.833
Bra033533 Brassica rapa Bra033533 I 0.833
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.833
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.833
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.833
MDP0000309902 Malus domestica MDP0000309902 I 0.833
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.833
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.833
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.830
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.827
Ciclev10022856m.g Citrus clementina Ciclev10022856m.g I 0.827
mgf022078m Mimulus guttatus mgf022078m I 0.827
Pm003128 Prunus mume Pm003128 I 0.825
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.825
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.825
Bra020650 Brassica rapa Bra020650 I 0.821
GATA15 Arabidopsis thaliana AT3G06740 D 0.816
Carubv10014841m.g Capsella rubella Carubv10014841m.g I 0.816
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.816
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.816
Bra037421 Brassica rapa Bra037421 I 0.816
Bo7g092660 Brassica oleracea Bo7g092660 I 0.816
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.816
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.816
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I 0.814
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I 0.814
OLONG_011157 Oryza longistaminata OLONG_011157 I 0.814
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I 0.814
ONIVA01G52080 Oryza nivara ONIVA01G52080 I 0.814
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I 0.814
OS01G0976800 Oryza sativa OS01G0976800 I 0.814
OBART01G45830 Oryza barthii OBART01G45830 I 0.814
OB01G55040 Oryza brachyantha OB01G55040 I 0.814
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I 0.814
BGIOSGA000005 Oryza indica BGIOSGA000005 I 0.814
LPERR04G11580 Leersia perrieri LPERR04G11580 I 0.814
MLOC_54886 Hordeum vulgare MLOC_54886 I 0.814
PGSC0003DMG400024783 Solanum tuberosum PGSC0003DMG400024783 I 0.814
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I 0.814
Solyc01g100220.2 Solanum lycopersicum Solyc01g100220.2 I 0.814
TRIUR3_03165 Triticum urartu TRIUR3_03165 I 0.814
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I 0.814
Si002983m.g Setaria italica Si002983m.g I 0.814
Cla005266 Citrullus lanatus Cla005266 N 0.814
Sb03g047520 Sorghum bicolor Sb03g047520 I 0.814
30128.m008883 Ricinus communis 30128.m008883 N 0.812
Aquca_003_00608 Aquilegia coerulea Aquca_003_00608 N 0.811
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N 0.811
GRMZM2G114775 Zea mays GRMZM2G114775 I 0.810
F775_43556 Aegilops tauschii F775_43556 I 0.810
GRMZM2G397616 Zea mays GRMZM2G397616 I 0.810
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.810
Pavir.J12379 Panicum virgatum Pavir.J12379 I 0.810
Sb01g002270 Sorghum bicolor Sb01g002270 I 0.810
Si037892m.g Setaria italica Si037892m.g I 0.810
Pavir.J03766 Panicum virgatum Pavir.J03766 I 0.810
Bra040288 Brassica rapa Bra040288 I 0.807
Bo1g147740 Brassica oleracea Bo1g147740 I 0.807
Lus10020684.g Linum usitatissimum Lus10020684.g N 0.807
Lus10029863.g Linum usitatissimum Lus10029863.g N 0.807
GRMZM2G325850 Zea mays GRMZM2G325850 I 0.805
Gorai.002G029400 Gossypium raimondii Gorai.002G029400 I 0.802