Ciclev10022856m.g (Citrus clementina)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Ciclev10022856m.g T196491_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG

CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.810 0.694
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10022856m GATA 29 64
Ciclev10022923m GATA 17 52

Links

Other GATA family TFs
Other Citrus clementina TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
orange1.1g033001m.g Citrus sinensis orange1.1g033001m.g I 0.867
30128.m008883 Ricinus communis 30128.m008883 N 0.853
VIT_14s0060g01520 Vitis vinifera VIT_14s0060g01520 I 0.839
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.839
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.839
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.839
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.839
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.839
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.839
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.839
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.839
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.839
TCM_026732 Theobroma cacao TCM_026732 I 0.839
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.828
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.828
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.828
ONIVA01G52080 Oryza nivara ONIVA01G52080 I 0.828
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.828
OGLUM01G50190 Oryza glumaepatula OGLUM01G50190 I 0.828
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.828
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.828
ORGLA01G0395900 Oryza glaberrima ORGLA01G0395900 I 0.828
ORUFI01G49320 Oryza rufipogon ORUFI01G49320 I 0.828
Si002983m.g Setaria italica Si002983m.g I 0.828
TRAES3BF026000060CFD_g Triticum aestivum TRAES3BF026000060CFD_g I 0.828
Traes_3AL_6DE434492 Triticum aestivum Traes_3AL_6DE434492 I 0.828
TRIUR3_03165 Triticum urartu TRIUR3_03165 I 0.828
Sb03g047520 Sorghum bicolor Sb03g047520 I 0.828
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.828
OS01G0976800 Oryza sativa OS01G0976800 I 0.828
OS03G0831200 Oryza sativa OS03G0831200 I 0.828
OBART03G39750 Oryza barthii OBART03G39750 I 0.828
OLONG_011157 Oryza longistaminata OLONG_011157 I 0.828
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.828
BGIOSGA000005 Oryza indica BGIOSGA000005 I 0.828
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.828
OBART01G45830 Oryza barthii OBART01G45830 I 0.828
BRADI2G62660 Brachypodium distachyon BRADI2G62660 I 0.828
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.828
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.828
OB01G55040 Oryza brachyantha OB01G55040 I 0.828
LPERR04G11580 Leersia perrieri LPERR04G11580 I 0.828
Pavir.Eb04066 Panicum virgatum Pavir.Eb04066 I 0.828
MLOC_54886 Hordeum vulgare MLOC_54886 I 0.828
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.827
29889.m003248 Ricinus communis 29889.m003248 I 0.827
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.827
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.827
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.827
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.827
TCM_004753 Theobroma cacao TCM_004753 I 0.827
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.827
AMTR_s00147p00053080 Amborella trichopoda AMTR_s00147p00053080 N 0.825
PK18820.1 Cannabis sativa PK18820.1 I 0.825
PK21934.1 Cannabis sativa PK21934.1 I 0.825
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.825
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.825
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.825
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.825
Pm003128 Prunus mume Pm003128 I 0.825
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.825
Cla009422 Citrullus lanatus Cla009422 I 0.825
PRUPE_ppa015310mg Prunus persica PRUPE_ppa015310mg I 0.825
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.825
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.825
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.822
Cla015362 Citrullus lanatus Cla015362 N 0.822
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.822
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.822
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.822
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.822
Ca_02992 Cicer arietinum Ca_02992 I 0.822
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.822
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.821
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.821
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.821
Bo00847s050 Brassica oleracea Bo00847s050 I 0.821
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.821
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.821
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.821
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.821
mgf003937m Mimulus guttatus mgf003937m I 0.821
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.821
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.821
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.821
Pm008287 Prunus mume Pm008287 I 0.821
TCM_021303 Theobroma cacao TCM_021303 I 0.821
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.821
Cla022104 Citrullus lanatus Cla022104 I 0.821
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.821
Bra020650 Brassica rapa Bra020650 I 0.821
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.821
MDP0000309902 Malus domestica MDP0000309902 I 0.820
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.820
mgf022078m Mimulus guttatus mgf022078m I 0.814
Gorai.013G206400 Gossypium raimondii Gorai.013G206400 N 0.814
GSMUA_Achr1G14780_001 Musa acuminata GSMUA_Achr1G14780_001 N 0.814
GSMUA_Achr8G33850_001 Musa acuminata GSMUA_Achr8G33850_001 N 0.814
PGSC0003DMG400023434 Solanum tuberosum PGSC0003DMG400023434 I 0.811
Solyc05g054400.2 Solanum lycopersicum Solyc05g054400.2 I 0.811
Aquca_003_00608 Aquilegia coerulea Aquca_003_00608 N 0.811
GATA16 Arabidopsis thaliana AT5G49300 D 0.810
GSMUA_Achr7G03800_001 Musa acuminata GSMUA_Achr7G03800_001 N 0.809
AMTR_s00025p00250380 Amborella trichopoda AMTR_s00025p00250380 N 0.809
Lus10020684.g Linum usitatissimum Lus10020684.g N 0.807
Lus10029863.g Linum usitatissimum Lus10029863.g N 0.807
Bo3g068560 Brassica oleracea Bo3g068560 I 0.806
Bra033533 Brassica rapa Bra033533 I 0.806
Bra012742 Brassica rapa Bra012742 I 0.806
Bra022184 Brassica rapa Bra022184 I 0.806
GATA17 Arabidopsis thaliana AT3G16870 I 0.806
Bo5g123610 Brassica oleracea Bo5g123610 I 0.806
Bra021209 Brassica rapa Bra021209 I 0.806
Thhalv10026300m.g Eutrema salsugineum Thhalv10026300m.g I 0.806
Thhalv10021612m.g Eutrema salsugineum Thhalv10021612m.g I 0.806
AT4G16141 Arabidopsis thaliana AT4G16141 I 0.806
Bo1g122970 Brassica oleracea Bo1g122970 I 0.806
Cagra.0053s0014 Capsella grandiflora Cagra.0053s0014 I 0.806
Cagra.5497s0020 Capsella grandiflora Cagra.5497s0020 I 0.806
Carubv10005860m.g Capsella rubella Carubv10005860m.g I 0.806
Carubv10014665m.g Capsella rubella Carubv10014665m.g I 0.806
Bostr.30275s0055 Boechera stricta Bostr.30275s0055 I 0.806
Bostr.28625s0006 Boechera stricta Bostr.28625s0006 I 0.806
GATA17 Arabidopsis lyrata fgenesh2_kg.3__1856__AT3G16870.1 I 0.806
fgenesh1_pm.C_scaffold_7002128 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7002128 I 0.806
Bo1g055120 Brassica oleracea Bo1g055120 I 0.806
Bo7g104200 Brassica oleracea Bo7g104200 I 0.806
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I 0.803