Lus10000587.g (Linum usitatissimum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Lus10000587.g T196625_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA26
M02001_2.00 		Arabidopsis thaliana
NNKATBNNNN
NNNNVATMNN		 PBM
Weirauch et al.(2014)
pTH7490 		0.827 0.853
GATA27
M02005_2.00 		Arabidopsis thaliana
NNGATBNNN
NNNVATCNN		 PBM
Weirauch et al.(2014)
pTH7492 		0.827 0.824
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10000587 GATA 66 101

Links

Other GATA family TFs
Other Linum usitatissimum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.30275s0218 Boechera stricta Bostr.30275s0218 I 0.827
Bostr.28243s0001 Boechera stricta Bostr.28243s0001 I 0.827
Aquca_082_00024 Aquilegia coerulea Aquca_082_00024 I 0.827
Cagra.3356s0048 Capsella grandiflora Cagra.3356s0048 I 0.827
Cagra.3675s0017 Capsella grandiflora Cagra.3675s0017 I 0.827
Carubv10026597m.g Capsella rubella Carubv10026597m.g I 0.827
Carubv10007115m.g Capsella rubella Carubv10007115m.g I 0.827
Aquca_053_00062 Aquilegia coerulea Aquca_053_00062 I 0.827
mgf024972m Mimulus guttatus mgf024972m I 0.827
cassava42719.valid.m1 Manihot esculenta cassava42719.valid.m1 I 0.827
27940.m000323 Ricinus communis 27940.m000323 I 0.827
estExt_fgenesh1_pg.C_1220019 Physcomitrella patens estExt_fgenesh1_pg.C_1220019 I 0.827
estExt_fgenesh1_pg.C_4100005 Physcomitrella patens estExt_fgenesh1_pg.C_4100005 I 0.827
mgf016271m Mimulus guttatus mgf016271m I 0.827
mgf015364m Mimulus guttatus mgf015364m I 0.827
Ciclev10019614m.g Citrus clementina Ciclev10019614m.g I 0.827
Eucgr.D02129 Eucalyptus grandis Eucgr.D02129 I 0.827
SapurV1A.0201s0160 Salix purpurea SapurV1A.0201s0160 I 0.827
SapurV1A.0107s0250 Salix purpurea SapurV1A.0107s0250 I 0.827
orange1.1g009155m.g Citrus sinensis orange1.1g009155m.g I 0.827
Thhalv10000871m.g Eutrema salsugineum Thhalv10000871m.g I 0.827
Thhalv10024940m.g Eutrema salsugineum Thhalv10024940m.g I 0.827
LjSGA_060304.1 Lotus japonicus LjSGA_060304.1 I 0.827
PK11095.1 Cannabis sativa PK11095.1 I 0.827
Lus10011010.g Linum usitatissimum Lus10011010.g I 0.827
Lus10011008.g Linum usitatissimum Lus10011008.g I 0.827
evm.TU.supercontig_74.95 Carica papaya evm.TU.supercontig_74.95 I 0.827
Eucgr.E00364 Eucalyptus grandis Eucgr.E00364 I 0.827
Gorai.003G177500 Gossypium raimondii Gorai.003G177500 I 0.827
Gorai.004G193200 Gossypium raimondii Gorai.004G193200 I 0.827
Gorai.008G231500 Gossypium raimondii Gorai.008G231500 I 0.827
Gorai.006G214400 Gossypium raimondii Gorai.006G214400 I 0.827
Ca_02313 Cicer arietinum Ca_02313 I 0.827
Traes_2DL_C46B73FA3 Triticum aestivum Traes_2DL_C46B73FA3 I 0.827
Bra021041 Brassica rapa Bra021041 I 0.827
Bra017501 Brassica rapa Bra017501 I 0.827
Bra022107 Brassica rapa Bra022107 I 0.827
Bra024961 Brassica rapa Bra024961 I 0.827
F775_19309 Aegilops tauschii F775_19309 I 0.827
Bra040167 Brassica rapa Bra040167 I 0.827
Bra017500 Brassica rapa Bra017500 I 0.827
Bo9g069320 Brassica oleracea Bo9g069320 I 0.827
GATA27 Arabidopsis thaliana AT5G47140 D 0.827
GATA26 Arabidopsis thaliana AT4G17570 D 0.827
Bo1g017650 Brassica oleracea Bo1g017650 I 0.827
Bo2g132210 Brassica oleracea Bo2g132210 I 0.827
Bo8g049560 Brassica oleracea Bo8g049560 I 0.827
Bo7g077300 Brassica oleracea Bo7g077300 I 0.827
GATA27 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8000066 I 0.827
GATA26 Arabidopsis lyrata fgenesh2_kg.7__2553__AT4G17570.1 I 0.827
GSMUA_Achr8G15000_001 Musa acuminata GSMUA_Achr8G15000_001 I 0.827
GSMUA_Achr5G18290_001 Musa acuminata GSMUA_Achr5G18290_001 I 0.827
POPTR_0001s15170 Populus trichocarpa POPTR_0001s15170 I 0.827
POPTR_0003s08080 Populus trichocarpa POPTR_0003s08080 I 0.827
TCM_015870 Theobroma cacao TCM_015870 I 0.827
GSMUA_Achr11G17690_001 Musa acuminata GSMUA_Achr11G17690_001 I 0.827
GSMUA_Achr2G18310_001 Musa acuminata GSMUA_Achr2G18310_001 I 0.827
GLYMA01G41370 Glycine max GLYMA01G41370 I 0.827
GLYMA11G04060 Glycine max GLYMA11G04060 I 0.827
GLYMA17G15610 Glycine max GLYMA17G15610 I 0.827
GLYMA05G05320 Glycine max GLYMA05G05320 I 0.827
Traes_2BL_4575D095D Triticum aestivum Traes_2BL_4575D095D I 0.816
Traes_2AL_01E6C08C0 Triticum aestivum Traes_2AL_01E6C08C0 I 0.816
MLOC_15510 Hordeum vulgare MLOC_15510 I 0.816
AMTR_s00008p00092930 Amborella trichopoda AMTR_s00008p00092930 I 0.816
MDP0000129092 Malus domestica MDP0000129092 I 0.816
GSMUA_Achr11G23110_001 Musa acuminata GSMUA_Achr11G23110_001 I 0.816
BRADI5G17370 Brachypodium distachyon BRADI5G17370 I 0.816