CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000129092
(
Malus domestica
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
MDP0000129092
T196661_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA26
M02001_2.00
Arabidopsis thaliana
NNKATBNNNN
NNNNVATMNN
PBM
Weirauch et al.(2014)
pTH7490
0.816
0.833
GATA27
M02005_2.00
Arabidopsis thaliana
NNGATBNNN
NNNVATCNN
PBM
Weirauch et al.(2014)
pTH7492
0.816
0.767
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000129092
GATA
33
65
DINECTPLWRNGPSDKPVLCNACGSRWXTKGTL
Links
Other
GATA
family TFs
Other
Malus domestica
TFs
70 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy