CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g022728m.g
(
Citrus sinensis
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
orange1.1g022728m.g
T196710_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA24
M01941_2.00
Arabidopsis thaliana
HGATBNN
NNVATCD
PBM
Weirauch et al.(2014)
pTH7661
0.850
0.886
GATA28
M01996_2.00
Arabidopsis thaliana
NNGATNN
NNATCNN
PBM
Weirauch et al.(2014)
pTH7505
0.850
0.886
GATA28
M06883_2.00
Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
ZML2_col_a
0.850
0.886
OS06G0698900
M02015_2.00
Oryza sativa
NNNNAHBNN
NNVDTNNNN
PBM
Weirauch et al.(2014)
pTH8641
0.850
0.829
ZIM
M06892_2.00
Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT
Dap-seq
OMalley et al.(2016)
ZIM_col_a
0.815
0.861
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g022728m
GATA
215
252
CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL
orange1.1g023560m
GATA
202
239
CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL
orange1.1g025411m
GATA
215
251
CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVR
orange1.1g027756m
GATA
141
178
CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL
Links
Other
GATA
family TFs
Other
Citrus sinensis
TFs
115 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy