Pavir.J03766 (Panicum virgatum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pavir.J03766 T196761_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GATA15
M01997_2.00
Arabidopsis thaliana
NNHGATCNN

NNGATCDNN
PBM
Weirauch et al.(2014)
pTH7662
0.807 0.778
GATA15
M06886_2.00
Arabidopsis thaliana
GATGATGATGATGATGATS

SATCATCATCATCATCATC
Dap-seq
OMalley et al.(2016)
GATA15_col_b
0.807 0.778
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG

CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.807 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J03766.1.p GATA 31 66
Pavir.J03766.2.p GATA 30 65

Links

Other GATA family TFs
Other Panicum virgatum TFs

88 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Sb01g002270 Sorghum bicolor Sb01g002270 I 0.867
Pavir.J12379 Panicum virgatum Pavir.J12379 I 0.867
GRMZM2G114775 Zea mays GRMZM2G114775 I 0.867
Si037892m.g Setaria italica Si037892m.g I 0.867
BRADI1G03020 Brachypodium distachyon BRADI1G03020 I 0.836
evm.TU.supercontig_151.51 Carica papaya evm.TU.supercontig_151.51 I 0.825
evm.TU.supercontig_48.133 Carica papaya evm.TU.supercontig_48.133 I 0.825
OPUNC03G36910 Oryza punctata OPUNC03G36910 I 0.825
OPUNC03G36900 Oryza punctata OPUNC03G36900 I 0.825
OMERI03G36600 Oryza meridionalis OMERI03G36600 I 0.825
ONIVA03G41600 Oryza nivara ONIVA03G41600 I 0.825
ORUFI03G41540 Oryza rufipogon ORUFI03G41540 I 0.825
OS03G0831200 Oryza sativa OS03G0831200 I 0.825
Gorai.013G127900 Gossypium raimondii Gorai.013G127900 I 0.825
Traes_5BL_F258582BB Triticum aestivum Traes_5BL_F258582BB I 0.825
OLONG_023900 Oryza longistaminata OLONG_023900 I 0.825
cassava15577.m1 Manihot esculenta cassava15577.m1 I 0.825
cassava15588.m1 Manihot esculenta cassava15588.m1 I 0.825
TCM_026732 Theobroma cacao TCM_026732 I 0.825
POPTR_0005s02040 Populus trichocarpa POPTR_0005s02040 I 0.825
SapurV1A.0107s0060 Salix purpurea SapurV1A.0107s0060 I 0.825
F775_43556 Aegilops tauschii F775_43556 I 0.825
OGLUM03G39650 Oryza glumaepatula OGLUM03G39650 I 0.825
SapurV1A.0186s0560 Salix purpurea SapurV1A.0186s0560 I 0.825
BGIOSGA013869 Oryza indica BGIOSGA013869 I 0.825
OBART03G39750 Oryza barthii OBART03G39750 I 0.825
LPERR03G33900 Leersia perrieri LPERR03G33900 I 0.825
BGIOSGA013867 Oryza indica BGIOSGA013867 I 0.825
Gorai.007G125000 Gossypium raimondii Gorai.007G125000 I 0.824
Eucgr.H04023 Eucalyptus grandis Eucgr.H04023 I 0.812
Cla009422 Citrullus lanatus Cla009422 I 0.812
PK18820.1 Cannabis sativa PK18820.1 I 0.812
Cucsa.069460 Cucumis sativus Cucsa.069460 I 0.812
VIT_05s0077g01450 Vitis vinifera VIT_05s0077g01450 I 0.812
Solyc12g099370.1 Solanum lycopersicum Solyc12g099370.1 I 0.812
orange1.1g032112m.g Citrus sinensis orange1.1g032112m.g I 0.812
Ciclev10006161m.g Citrus clementina Ciclev10006161m.g I 0.812
PGSC0003DMG400004624 Solanum tuberosum PGSC0003DMG400004624 I 0.812
mgf022078m Mimulus guttatus mgf022078m I 0.811
GLYMA07G37190 Glycine max GLYMA07G37190 I 0.810
GLYMA17G03410 Glycine max GLYMA17G03410 I 0.810
cassava37139.valid.m1 Manihot esculenta cassava37139.valid.m1 I 0.810
Gorai.008G142200 Gossypium raimondii Gorai.008G142200 I 0.810
29889.m003248 Ricinus communis 29889.m003248 I 0.810
PK21934.1 Cannabis sativa PK21934.1 I 0.810
orange1.1g030971m.g Citrus sinensis orange1.1g030971m.g I 0.810
Ciclev10003698m.g Citrus clementina Ciclev10003698m.g I 0.810
TCM_004753 Theobroma cacao TCM_004753 I 0.810
Eucgr.A00193 Eucalyptus grandis Eucgr.A00193 I 0.807
Thhalv10021708m.g Eutrema salsugineum Thhalv10021708m.g I 0.807
Lus10037721.g Linum usitatissimum Lus10037721.g I 0.807
Carubv10027332m.g Capsella rubella Carubv10027332m.g I 0.807
Lus10016849.g Linum usitatissimum Lus10016849.g I 0.807
Thhalv10005103m.g Eutrema salsugineum Thhalv10005103m.g I 0.807
gene05175-v1.0-hybrid Fragaria vesca gene05175-v1.0-hybrid I 0.807
Gorai.005G065300 Gossypium raimondii Gorai.005G065300 I 0.807
evm.TU.supercontig_9.102 Carica papaya evm.TU.supercontig_9.102 I 0.807
Cla022104 Citrullus lanatus Cla022104 I 0.807
GATA16 Arabidopsis thaliana AT5G49300 D 0.807
PRUPE_ppa013171mg Prunus persica PRUPE_ppa013171mg I 0.807
GATA16 Arabidopsis lyrata scaffold_801309.1 I 0.807
Carubv10014841m.g Capsella rubella Carubv10014841m.g I 0.807
Bo00847s050 Brassica oleracea Bo00847s050 I 0.807
GATA15 Arabidopsis lyrata fgenesh2_kg.3__690__AT3G06740.1 I 0.807
Bo7g092660 Brassica oleracea Bo7g092660 I 0.807
Bra037421 Brassica rapa Bra037421 I 0.807
TCM_021303 Theobroma cacao TCM_021303 I 0.807
Bostr.15774s0060 Boechera stricta Bostr.15774s0060 I 0.807
Bostr.22252s0362 Boechera stricta Bostr.22252s0362 I 0.807
Cagra.0133s0025 Capsella grandiflora Cagra.0133s0025 I 0.807
Cucsa.252730 Cucumis sativus Cucsa.252730 I 0.807
mgf003937m Mimulus guttatus mgf003937m I 0.807
GATA15 Arabidopsis thaliana AT3G06740 D 0.807
Pm008287 Prunus mume Pm008287 I 0.807
cassava43030.valid.m1 Manihot esculenta cassava43030.valid.m1 I 0.807
SapurV1A.0739s0060 Salix purpurea SapurV1A.0739s0060 I 0.806
SapurV1A.2413s0010 Salix purpurea SapurV1A.2413s0010 I 0.806
LjSGA_011217.1 Lotus japonicus LjSGA_011217.1 I 0.806
Bo1g147740 Brassica oleracea Bo1g147740 I 0.806
POPTR_0010s00360 Populus trichocarpa POPTR_0010s00360 I 0.806
Ca_02992 Cicer arietinum Ca_02992 I 0.806
Bra040288 Brassica rapa Bra040288 I 0.806
POPTR_0008s22950 Populus trichocarpa POPTR_0008s22950 I 0.806
MTR_4g121110 Medicago truncatula MTR_4g121110 I 0.806
Lus10031464.g Linum usitatissimum Lus10031464.g I 0.805
MDP0000309902 Malus domestica MDP0000309902 I 0.805
GRMZM2G325850 Zea mays GRMZM2G325850 I 0.802